Gene : Medtr3g102790 M. truncatula Mt4.0v1
Defline:  (1 of 5) PF09177 - Syntaxin 6, N-terminal (Syntaxin-6_N) Description:  syntaxin 6, amine-terminal protein
Genomic Order:  5643 Name:  ? Medtr3g102790
Secondary Identifier:  ? PAC:31059408
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g102790 0.5kb upstream 0.5kb upstream 4109 true chr3: 47356639-47360747 Medicago truncatula
Medtr3g102790 0.5kb upstream 0.5kb upstream 500 false chr3: 47360248-47360747 Medicago truncatula
Medtr3g102790 0.5kb downstream 0.5kb downstream 4109 true chr3: 47356139-47360247 Medicago truncatula
Medtr3g102790 0.5kb downstream 0.5kb downstream 500 false chr3: 47356139-47356638 Medicago truncatula
Medtr3g102790 1.0kb upstream 1.0kb upstream 4609 true chr3: 47356639-47361247 Medicago truncatula
Medtr3g102790 1.0kb upstream 1.0kb upstream 1000 false chr3: 47360248-47361247 Medicago truncatula
Medtr3g102790 1.0kb downstream 1.0kb downstream 4609 true chr3: 47355639-47360247 Medicago truncatula
Medtr3g102790 1.0kb downstream 1.0kb downstream 1000 false chr3: 47355639-47356638 Medicago truncatula
Medtr3g102790 2.0kb upstream 2.0kb upstream 5609 true chr3: 47356639-47362247 Medicago truncatula
Medtr3g102790 2.0kb upstream 2.0kb upstream 2000 false chr3: 47360248-47362247 Medicago truncatula
Medtr3g102790 2.0kb downstream 2.0kb downstream 5609 true chr3: 47354639-47360247 Medicago truncatula
Medtr3g102790 2.0kb downstream 2.0kb downstream 2000 false chr3: 47354639-47356638 Medicago truncatula
Medtr3g102790 5.0kb upstream 5.0kb upstream 8609 true chr3: 47356639-47365247 Medicago truncatula
Medtr3g102790 5.0kb upstream 5.0kb upstream 5000 false chr3: 47360248-47365247 Medicago truncatula
Medtr3g102790 5.0kb downstream 5.0kb downstream 8609 true chr3: 47351639-47360247 Medicago truncatula
Medtr3g102790 5.0kb downstream 5.0kb downstream 5000 false chr3: 47351639-47356638 Medicago truncatula
Medtr3g102790 10.0kb upstream 10.0kb upstream 13609 true chr3: 47356639-47370247 Medicago truncatula
Medtr3g102790 10.0kb upstream 10.0kb upstream 10000 false chr3: 47360248-47370247 Medicago truncatula
Medtr3g102790 10.0kb downstream 10.0kb downstream 13609 true chr3: 47346639-47360247 Medicago truncatula
Medtr3g102790 10.0kb downstream 10.0kb downstream 10000 false chr3: 47346639-47356638 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309285 5265 Fabidae View MSA
124064346 5270 Rosid View MSA
123743910 5271 Pentapetalae View MSA
122788324 5272 Eudicot View MSA
122042907 5273 Angiosperm View MSA
121348883 5274 Embryophyte View MSA
123381058 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.882        
cufflinks 2.336        
cufflinks 2.97       High
cufflinks 1.565        
cufflinks 2.477        
cufflinks 1.12       Low
cufflinks 2.203        
cufflinks 2.411        
cufflinks 1.963        

0 Strain