Gene : Medtr3g102420 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11239:SF14 - DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12 Description:  DNA-directed RNA polymerase subunit
Genomic Order:  5613 Name:  ? Medtr3g102420
Secondary Identifier:  ? PAC:31053949
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20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g102420 0.5kb upstream 0.5kb upstream 3877 true chr3: 47199940-47203816 Medicago truncatula
Medtr3g102420 0.5kb upstream 0.5kb upstream 500 false chr3: 47199940-47200439 Medicago truncatula
Medtr3g102420 0.5kb downstream 0.5kb downstream 3877 true chr3: 47200440-47204316 Medicago truncatula
Medtr3g102420 0.5kb downstream 0.5kb downstream 500 false chr3: 47203817-47204316 Medicago truncatula
Medtr3g102420 1.0kb upstream 1.0kb upstream 4377 true chr3: 47199440-47203816 Medicago truncatula
Medtr3g102420 1.0kb upstream 1.0kb upstream 1000 false chr3: 47199440-47200439 Medicago truncatula
Medtr3g102420 1.0kb downstream 1.0kb downstream 4377 true chr3: 47200440-47204816 Medicago truncatula
Medtr3g102420 1.0kb downstream 1.0kb downstream 1000 false chr3: 47203817-47204816 Medicago truncatula
Medtr3g102420 2.0kb upstream 2.0kb upstream 5377 true chr3: 47198440-47203816 Medicago truncatula
Medtr3g102420 2.0kb upstream 2.0kb upstream 2000 false chr3: 47198440-47200439 Medicago truncatula
Medtr3g102420 2.0kb downstream 2.0kb downstream 5377 true chr3: 47200440-47205816 Medicago truncatula
Medtr3g102420 2.0kb downstream 2.0kb downstream 2000 false chr3: 47203817-47205816 Medicago truncatula
Medtr3g102420 5.0kb upstream 5.0kb upstream 8377 true chr3: 47195440-47203816 Medicago truncatula
Medtr3g102420 5.0kb upstream 5.0kb upstream 5000 false chr3: 47195440-47200439 Medicago truncatula
Medtr3g102420 5.0kb downstream 5.0kb downstream 8377 true chr3: 47200440-47208816 Medicago truncatula
Medtr3g102420 5.0kb downstream 5.0kb downstream 5000 false chr3: 47203817-47208816 Medicago truncatula
Medtr3g102420 10.0kb upstream 10.0kb upstream 13377 true chr3: 47190440-47203816 Medicago truncatula
Medtr3g102420 10.0kb upstream 10.0kb upstream 10000 false chr3: 47190440-47200439 Medicago truncatula
Medtr3g102420 10.0kb downstream 10.0kb downstream 13377 true chr3: 47200440-47213816 Medicago truncatula
Medtr3g102420 10.0kb downstream 10.0kb downstream 10000 false chr3: 47203817-47213816 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303058 5265 Fabidae View MSA
124067299 5270 Rosid View MSA
123753093 5271 Pentapetalae View MSA
122789188 5272 Eudicot View MSA
122045535 5273 Angiosperm View MSA
121350317 5274 Embryophyte View MSA
123425253 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.018        
cufflinks 5.916        
cufflinks 5.862        
cufflinks 12.487     High High
cufflinks 6.89        
cufflinks 6.692        
cufflinks 7.436        
cufflinks 4.867       Low
cufflinks 9.99       High

0 Strain