Gene : Medtr3g102220 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR12411//PTHR12411:SF352 - CYSTEINE PROTEASE FAMILY C1-RELATED Description:  papain family cysteine protease
Genomic Order:  5605 Name:  ? Medtr3g102220
Secondary Identifier:  ? PAC:31060047
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g102220 0.5kb upstream 0.5kb upstream 5977 true chr3: 47105924-47111900 Medicago truncatula
Medtr3g102220 0.5kb upstream 0.5kb upstream 500 false chr3: 47105924-47106423 Medicago truncatula
Medtr3g102220 0.5kb downstream 0.5kb downstream 5977 true chr3: 47106424-47112400 Medicago truncatula
Medtr3g102220 0.5kb downstream 0.5kb downstream 500 false chr3: 47111901-47112400 Medicago truncatula
Medtr3g102220 1.0kb upstream 1.0kb upstream 6477 true chr3: 47105424-47111900 Medicago truncatula
Medtr3g102220 1.0kb upstream 1.0kb upstream 1000 false chr3: 47105424-47106423 Medicago truncatula
Medtr3g102220 1.0kb downstream 1.0kb downstream 6477 true chr3: 47106424-47112900 Medicago truncatula
Medtr3g102220 1.0kb downstream 1.0kb downstream 1000 false chr3: 47111901-47112900 Medicago truncatula
Medtr3g102220 2.0kb upstream 2.0kb upstream 7477 true chr3: 47104424-47111900 Medicago truncatula
Medtr3g102220 2.0kb upstream 2.0kb upstream 2000 false chr3: 47104424-47106423 Medicago truncatula
Medtr3g102220 2.0kb downstream 2.0kb downstream 7477 true chr3: 47106424-47113900 Medicago truncatula
Medtr3g102220 2.0kb downstream 2.0kb downstream 2000 false chr3: 47111901-47113900 Medicago truncatula
Medtr3g102220 5.0kb upstream 5.0kb upstream 10477 true chr3: 47101424-47111900 Medicago truncatula
Medtr3g102220 5.0kb upstream 5.0kb upstream 5000 false chr3: 47101424-47106423 Medicago truncatula
Medtr3g102220 5.0kb downstream 5.0kb downstream 10477 true chr3: 47106424-47116900 Medicago truncatula
Medtr3g102220 5.0kb downstream 5.0kb downstream 5000 false chr3: 47111901-47116900 Medicago truncatula
Medtr3g102220 10.0kb upstream 10.0kb upstream 15477 true chr3: 47096424-47111900 Medicago truncatula
Medtr3g102220 10.0kb upstream 10.0kb upstream 10000 false chr3: 47096424-47106423 Medicago truncatula
Medtr3g102220 10.0kb downstream 10.0kb downstream 15477 true chr3: 47106424-47121900 Medicago truncatula
Medtr3g102220 10.0kb downstream 10.0kb downstream 10000 false chr3: 47111901-47121900 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122260775 5265 Fabidae Singleton cluster - no MSA
124041298 5270 Rosid View MSA
123751389 5271 Pentapetalae View MSA
122796567 5272 Eudicot View MSA
122043914 5273 Angiosperm View MSA
123428950 5275 Viridiplantae View MSA
121348634 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.89        
cufflinks 4.79        
cufflinks 4.34        
cufflinks 4.184        
cufflinks 5.219        
cufflinks 1.948       Low
cufflinks 5.11        
cufflinks 5.097        
cufflinks 8.592       High

0 Strain