Gene : Medtr3g103120 M. truncatula Mt4.0v1

Defline:  (1 of 1) PF00583//PF00628//PF16135 - Acetyltransferase (GNAT) family (Acetyltransf_1) // PHD-finger (PHD) // TPL-binding domain in jasmonate signalling (Jas) Description:  RING/FYVE/PHD zinc finger protein
Genomic Order:  5668 Name:  ? Medtr3g103120
Secondary Identifier:  ? PAC:31061225

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g103120 0.5kb upstream 0.5kb upstream 3032 true chr3: 47526557-47529588 Medicago truncatula
Medtr3g103120 0.5kb upstream 0.5kb upstream 500 false chr3: 47526557-47527056 Medicago truncatula
Medtr3g103120 0.5kb downstream 0.5kb downstream 3032 true chr3: 47527057-47530088 Medicago truncatula
Medtr3g103120 0.5kb downstream 0.5kb downstream 500 false chr3: 47529589-47530088 Medicago truncatula
Medtr3g103120 1.0kb upstream 1.0kb upstream 3532 true chr3: 47526057-47529588 Medicago truncatula
Medtr3g103120 1.0kb upstream 1.0kb upstream 1000 false chr3: 47526057-47527056 Medicago truncatula
Medtr3g103120 1.0kb downstream 1.0kb downstream 3532 true chr3: 47527057-47530588 Medicago truncatula
Medtr3g103120 1.0kb downstream 1.0kb downstream 1000 false chr3: 47529589-47530588 Medicago truncatula
Medtr3g103120 2.0kb upstream 2.0kb upstream 4532 true chr3: 47525057-47529588 Medicago truncatula
Medtr3g103120 2.0kb upstream 2.0kb upstream 2000 false chr3: 47525057-47527056 Medicago truncatula
Medtr3g103120 2.0kb downstream 2.0kb downstream 4532 true chr3: 47527057-47531588 Medicago truncatula
Medtr3g103120 2.0kb downstream 2.0kb downstream 2000 false chr3: 47529589-47531588 Medicago truncatula
Medtr3g103120 5.0kb upstream 5.0kb upstream 7532 true chr3: 47522057-47529588 Medicago truncatula
Medtr3g103120 5.0kb upstream 5.0kb upstream 5000 false chr3: 47522057-47527056 Medicago truncatula
Medtr3g103120 5.0kb downstream 5.0kb downstream 7532 true chr3: 47527057-47534588 Medicago truncatula
Medtr3g103120 5.0kb downstream 5.0kb downstream 5000 false chr3: 47529589-47534588 Medicago truncatula
Medtr3g103120 10.0kb upstream 10.0kb upstream 12532 true chr3: 47517057-47529588 Medicago truncatula
Medtr3g103120 10.0kb upstream 10.0kb upstream 10000 false chr3: 47517057-47527056 Medicago truncatula
Medtr3g103120 10.0kb downstream 10.0kb downstream 12532 true chr3: 47527057-47539588 Medicago truncatula
Medtr3g103120 10.0kb downstream 10.0kb downstream 10000 false chr3: 47529589-47539588 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314856 5265 Fabidae View MSA
124072957 5270 Rosid View MSA
123753640 5271 Pentapetalae View MSA
122796648 5272 Eudicot View MSA
122050898 5273 Angiosperm View MSA
121351041 5274 Embryophyte View MSA
123425735 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.014     Low  
cufflinks 0.009     Low Low
cufflinks 0.009     Low Low
cufflinks 0.028     Low  
cufflinks 0.032     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.032     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.058     Low High

0 Strain