Gene : Medtr3g096190 M. truncatula Mt4.0v1
Defline:  (1 of 4) 2.1.1.257 - tRNA (pseudouridine(54)-N(1))-methyltransferase / M(1)-Psi methyltransferase Description:  nucleolar essential protein
Genomic Order:  5179 Name:  ? Medtr3g096190
Secondary Identifier:  ? PAC:31060423
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g096190 0.5kb upstream 0.5kb upstream 4709 true chr3: 43948147-43952855 Medicago truncatula
Medtr3g096190 0.5kb upstream 0.5kb upstream 500 false chr3: 43952356-43952855 Medicago truncatula
Medtr3g096190 0.5kb downstream 0.5kb downstream 4709 true chr3: 43947647-43952355 Medicago truncatula
Medtr3g096190 0.5kb downstream 0.5kb downstream 500 false chr3: 43947647-43948146 Medicago truncatula
Medtr3g096190 1.0kb upstream 1.0kb upstream 5209 true chr3: 43948147-43953355 Medicago truncatula
Medtr3g096190 1.0kb upstream 1.0kb upstream 1000 false chr3: 43952356-43953355 Medicago truncatula
Medtr3g096190 1.0kb downstream 1.0kb downstream 5209 true chr3: 43947147-43952355 Medicago truncatula
Medtr3g096190 1.0kb downstream 1.0kb downstream 1000 false chr3: 43947147-43948146 Medicago truncatula
Medtr3g096190 2.0kb upstream 2.0kb upstream 6209 true chr3: 43948147-43954355 Medicago truncatula
Medtr3g096190 2.0kb upstream 2.0kb upstream 2000 false chr3: 43952356-43954355 Medicago truncatula
Medtr3g096190 2.0kb downstream 2.0kb downstream 6209 true chr3: 43946147-43952355 Medicago truncatula
Medtr3g096190 2.0kb downstream 2.0kb downstream 2000 false chr3: 43946147-43948146 Medicago truncatula
Medtr3g096190 5.0kb upstream 5.0kb upstream 9209 true chr3: 43948147-43957355 Medicago truncatula
Medtr3g096190 5.0kb upstream 5.0kb upstream 5000 false chr3: 43952356-43957355 Medicago truncatula
Medtr3g096190 5.0kb downstream 5.0kb downstream 9209 true chr3: 43943147-43952355 Medicago truncatula
Medtr3g096190 5.0kb downstream 5.0kb downstream 5000 false chr3: 43943147-43948146 Medicago truncatula
Medtr3g096190 10.0kb upstream 10.0kb upstream 14209 true chr3: 43948147-43962355 Medicago truncatula
Medtr3g096190 10.0kb upstream 10.0kb upstream 10000 false chr3: 43952356-43962355 Medicago truncatula
Medtr3g096190 10.0kb downstream 10.0kb downstream 14209 true chr3: 43938147-43952355 Medicago truncatula
Medtr3g096190 10.0kb downstream 10.0kb downstream 10000 false chr3: 43938147-43948146 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303918 5265 Fabidae View MSA
124066897 5270 Rosid View MSA
123749345 5271 Pentapetalae View MSA
122789424 5272 Eudicot View MSA
122046063 5273 Angiosperm View MSA
121345370 5274 Embryophyte View MSA
123425050 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.86        
cufflinks 3.921        
cufflinks 4.005        
cufflinks 1.961        
cufflinks 5.231       High
cufflinks 0.879       Low
cufflinks 2.129        
cufflinks 3.489        
cufflinks 1.745        

0 Strain