Gene : Medtr3g096690 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR13215 - RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR Description:  RNA polymerase II transcriptional coactivator
Genomic Order:  5225 Name:  ? Medtr3g096690
Secondary Identifier:  ? PAC:31058120
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g096690 0.5kb upstream 0.5kb upstream 2738 true chr3: 44248130-44250867 Medicago truncatula
Medtr3g096690 0.5kb upstream 0.5kb upstream 500 false chr3: 44248130-44248629 Medicago truncatula
Medtr3g096690 0.5kb downstream 0.5kb downstream 2738 true chr3: 44248630-44251367 Medicago truncatula
Medtr3g096690 0.5kb downstream 0.5kb downstream 500 false chr3: 44250868-44251367 Medicago truncatula
Medtr3g096690 1.0kb upstream 1.0kb upstream 3238 true chr3: 44247630-44250867 Medicago truncatula
Medtr3g096690 1.0kb upstream 1.0kb upstream 1000 false chr3: 44247630-44248629 Medicago truncatula
Medtr3g096690 1.0kb downstream 1.0kb downstream 3238 true chr3: 44248630-44251867 Medicago truncatula
Medtr3g096690 1.0kb downstream 1.0kb downstream 1000 false chr3: 44250868-44251867 Medicago truncatula
Medtr3g096690 2.0kb upstream 2.0kb upstream 4238 true chr3: 44246630-44250867 Medicago truncatula
Medtr3g096690 2.0kb upstream 2.0kb upstream 2000 false chr3: 44246630-44248629 Medicago truncatula
Medtr3g096690 2.0kb downstream 2.0kb downstream 4238 true chr3: 44248630-44252867 Medicago truncatula
Medtr3g096690 2.0kb downstream 2.0kb downstream 2000 false chr3: 44250868-44252867 Medicago truncatula
Medtr3g096690 5.0kb upstream 5.0kb upstream 7238 true chr3: 44243630-44250867 Medicago truncatula
Medtr3g096690 5.0kb upstream 5.0kb upstream 5000 false chr3: 44243630-44248629 Medicago truncatula
Medtr3g096690 5.0kb downstream 5.0kb downstream 7238 true chr3: 44248630-44255867 Medicago truncatula
Medtr3g096690 5.0kb downstream 5.0kb downstream 5000 false chr3: 44250868-44255867 Medicago truncatula
Medtr3g096690 10.0kb upstream 10.0kb upstream 12238 true chr3: 44238630-44250867 Medicago truncatula
Medtr3g096690 10.0kb upstream 10.0kb upstream 10000 false chr3: 44238630-44248629 Medicago truncatula
Medtr3g096690 10.0kb downstream 10.0kb downstream 12238 true chr3: 44248630-44260867 Medicago truncatula
Medtr3g096690 10.0kb downstream 10.0kb downstream 10000 false chr3: 44250868-44260867 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306902 5265 Fabidae View MSA
124067021 5270 Rosid View MSA
123736875 5271 Pentapetalae View MSA
122796364 5272 Eudicot View MSA
122048027 5273 Angiosperm View MSA
121344440 5274 Embryophyte View MSA
123380043 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.135        
cufflinks 1.921       Low
cufflinks 2.257        
cufflinks 4.808       High
cufflinks 2.665        
cufflinks 3.075        
cufflinks 2.906        
cufflinks 1.964       Low
cufflinks 4.754       High

0 Strain