Gene : Medtr3g088975 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR33133:SF5 - EXPRESSED PROTEIN Description:  transmembrane protein, putative
Genomic Order:  4747 Name:  ? Medtr3g088975
Secondary Identifier:  ? PAC:31056448
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g088975 0.5kb upstream 0.5kb upstream 1880 true chr3: 40727803-40729682 Medicago truncatula
Medtr3g088975 0.5kb upstream 0.5kb upstream 500 false chr3: 40729183-40729682 Medicago truncatula
Medtr3g088975 0.5kb downstream 0.5kb downstream 1880 true chr3: 40727303-40729182 Medicago truncatula
Medtr3g088975 0.5kb downstream 0.5kb downstream 500 false chr3: 40727303-40727802 Medicago truncatula
Medtr3g088975 1.0kb upstream 1.0kb upstream 2380 true chr3: 40727803-40730182 Medicago truncatula
Medtr3g088975 1.0kb upstream 1.0kb upstream 1000 false chr3: 40729183-40730182 Medicago truncatula
Medtr3g088975 1.0kb downstream 1.0kb downstream 2380 true chr3: 40726803-40729182 Medicago truncatula
Medtr3g088975 1.0kb downstream 1.0kb downstream 1000 false chr3: 40726803-40727802 Medicago truncatula
Medtr3g088975 2.0kb upstream 2.0kb upstream 3380 true chr3: 40727803-40731182 Medicago truncatula
Medtr3g088975 2.0kb upstream 2.0kb upstream 2000 false chr3: 40729183-40731182 Medicago truncatula
Medtr3g088975 2.0kb downstream 2.0kb downstream 3380 true chr3: 40725803-40729182 Medicago truncatula
Medtr3g088975 2.0kb downstream 2.0kb downstream 2000 false chr3: 40725803-40727802 Medicago truncatula
Medtr3g088975 5.0kb upstream 5.0kb upstream 6380 true chr3: 40727803-40734182 Medicago truncatula
Medtr3g088975 5.0kb upstream 5.0kb upstream 5000 false chr3: 40729183-40734182 Medicago truncatula
Medtr3g088975 5.0kb downstream 5.0kb downstream 6380 true chr3: 40722803-40729182 Medicago truncatula
Medtr3g088975 5.0kb downstream 5.0kb downstream 5000 false chr3: 40722803-40727802 Medicago truncatula
Medtr3g088975 10.0kb upstream 10.0kb upstream 11380 true chr3: 40727803-40739182 Medicago truncatula
Medtr3g088975 10.0kb upstream 10.0kb upstream 10000 false chr3: 40729183-40739182 Medicago truncatula
Medtr3g088975 10.0kb downstream 10.0kb downstream 11380 true chr3: 40717803-40729182 Medicago truncatula
Medtr3g088975 10.0kb downstream 10.0kb downstream 10000 false chr3: 40717803-40727802 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312015 5265 Fabidae View MSA
124072395 5270 Rosid View MSA
123752432 5271 Pentapetalae View MSA
122795545 5272 Eudicot View MSA
122047131 5273 Angiosperm View MSA
121347581 5274 Embryophyte View MSA
123380576 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.112     High  
cufflinks 0.242       Low
cufflinks 0.484        
cufflinks 17.685     High  
cufflinks 0.515        
cufflinks 41.157     High High
cufflinks 64.623     High High
cufflinks 0.441        
cufflinks 20.874     High  

0 Strain