Gene : Medtr3g088950 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF00764//PF13041 - Arginosuccinate synthase (Arginosuc_synth) // PPR repeat family (PPR_2) Description:  pentatricopeptide (PPR) repeat protein, putative
Genomic Order:  3798 Name:  ? Medtr3g088950
Secondary Identifier:  ? PAC:31054898
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g088950 0.5kb upstream 0.5kb upstream 3245 true chr3: 33996507-33999751 Medicago truncatula
Medtr3g088950 0.5kb upstream 0.5kb upstream 500 false chr3: 33996507-33997006 Medicago truncatula
Medtr3g088950 0.5kb downstream 0.5kb downstream 3245 true chr3: 33997007-34000251 Medicago truncatula
Medtr3g088950 0.5kb downstream 0.5kb downstream 500 false chr3: 33999752-34000251 Medicago truncatula
Medtr3g088950 1.0kb upstream 1.0kb upstream 3745 true chr3: 33996007-33999751 Medicago truncatula
Medtr3g088950 1.0kb upstream 1.0kb upstream 1000 false chr3: 33996007-33997006 Medicago truncatula
Medtr3g088950 1.0kb downstream 1.0kb downstream 3745 true chr3: 33997007-34000751 Medicago truncatula
Medtr3g088950 1.0kb downstream 1.0kb downstream 1000 false chr3: 33999752-34000751 Medicago truncatula
Medtr3g088950 2.0kb upstream 2.0kb upstream 4745 true chr3: 33995007-33999751 Medicago truncatula
Medtr3g088950 2.0kb upstream 2.0kb upstream 2000 false chr3: 33995007-33997006 Medicago truncatula
Medtr3g088950 2.0kb downstream 2.0kb downstream 4745 true chr3: 33997007-34001751 Medicago truncatula
Medtr3g088950 2.0kb downstream 2.0kb downstream 2000 false chr3: 33999752-34001751 Medicago truncatula
Medtr3g088950 5.0kb upstream 5.0kb upstream 7745 true chr3: 33992007-33999751 Medicago truncatula
Medtr3g088950 5.0kb upstream 5.0kb upstream 5000 false chr3: 33992007-33997006 Medicago truncatula
Medtr3g088950 5.0kb downstream 5.0kb downstream 7745 true chr3: 33997007-34004751 Medicago truncatula
Medtr3g088950 5.0kb downstream 5.0kb downstream 5000 false chr3: 33999752-34004751 Medicago truncatula
Medtr3g088950 10.0kb upstream 10.0kb upstream 12745 true chr3: 33987007-33999751 Medicago truncatula
Medtr3g088950 10.0kb upstream 10.0kb upstream 10000 false chr3: 33987007-33997006 Medicago truncatula
Medtr3g088950 10.0kb downstream 10.0kb downstream 12745 true chr3: 33997007-34009751 Medicago truncatula
Medtr3g088950 10.0kb downstream 10.0kb downstream 10000 false chr3: 33999752-34009751 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315642 5265 Fabidae View MSA
124040557 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.103        
cufflinks 0.029     Low  
cufflinks 0.091        
cufflinks 0.009     Low Low
cufflinks 0.111       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.041     Low  
cufflinks 0.067        
cufflinks 0.013     Low Low

0 Strain