Gene : Medtr3g090170 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11679:SF3 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 Description:  vacuolar protein sorting-associated protein
Genomic Order:  4783 Name:  ? Medtr3g090170
Secondary Identifier:  ? PAC:31057963
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g090170 0.5kb upstream 0.5kb upstream 7772 true chr3: 40980870-40988641 Medicago truncatula
Medtr3g090170 0.5kb upstream 0.5kb upstream 500 false chr3: 40980870-40981369 Medicago truncatula
Medtr3g090170 0.5kb downstream 0.5kb downstream 7772 true chr3: 40981370-40989141 Medicago truncatula
Medtr3g090170 0.5kb downstream 0.5kb downstream 500 false chr3: 40988642-40989141 Medicago truncatula
Medtr3g090170 1.0kb upstream 1.0kb upstream 8272 true chr3: 40980370-40988641 Medicago truncatula
Medtr3g090170 1.0kb upstream 1.0kb upstream 1000 false chr3: 40980370-40981369 Medicago truncatula
Medtr3g090170 1.0kb downstream 1.0kb downstream 8272 true chr3: 40981370-40989641 Medicago truncatula
Medtr3g090170 1.0kb downstream 1.0kb downstream 1000 false chr3: 40988642-40989641 Medicago truncatula
Medtr3g090170 2.0kb upstream 2.0kb upstream 9272 true chr3: 40979370-40988641 Medicago truncatula
Medtr3g090170 2.0kb upstream 2.0kb upstream 2000 false chr3: 40979370-40981369 Medicago truncatula
Medtr3g090170 2.0kb downstream 2.0kb downstream 9272 true chr3: 40981370-40990641 Medicago truncatula
Medtr3g090170 2.0kb downstream 2.0kb downstream 2000 false chr3: 40988642-40990641 Medicago truncatula
Medtr3g090170 5.0kb upstream 5.0kb upstream 12272 true chr3: 40976370-40988641 Medicago truncatula
Medtr3g090170 5.0kb upstream 5.0kb upstream 5000 false chr3: 40976370-40981369 Medicago truncatula
Medtr3g090170 5.0kb downstream 5.0kb downstream 12272 true chr3: 40981370-40993641 Medicago truncatula
Medtr3g090170 5.0kb downstream 5.0kb downstream 5000 false chr3: 40988642-40993641 Medicago truncatula
Medtr3g090170 10.0kb upstream 10.0kb upstream 17272 true chr3: 40971370-40988641 Medicago truncatula
Medtr3g090170 10.0kb upstream 10.0kb upstream 10000 false chr3: 40971370-40981369 Medicago truncatula
Medtr3g090170 10.0kb downstream 10.0kb downstream 17272 true chr3: 40981370-40998641 Medicago truncatula
Medtr3g090170 10.0kb downstream 10.0kb downstream 10000 false chr3: 40988642-40998641 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308424 5265 Fabidae View MSA
124069104 5270 Rosid View MSA
123737015 5271 Pentapetalae View MSA
122795036 5272 Eudicot View MSA
122044775 5273 Angiosperm View MSA
121347331 5274 Embryophyte View MSA
123424934 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.061        
cufflinks 2.15        
cufflinks 2.053        
cufflinks 1.033       Low
cufflinks 2.385        
cufflinks 0.638       Low
cufflinks 1.734        
cufflinks 1.662        
cufflinks 1.46        

0 Strain