Gene : Medtr3g089880 M. truncatula Mt4.0v1
Defline:  (1 of 210) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  pentatricopeptide (PPR) repeat protein
Genomic Order:  4760 Name:  ? Medtr3g089880
Secondary Identifier:  ? PAC:31058861
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g089880 0.5kb upstream 0.5kb upstream 3088 true chr3: 40853827-40856914 Medicago truncatula
Medtr3g089880 0.5kb upstream 0.5kb upstream 500 false chr3: 40853827-40854326 Medicago truncatula
Medtr3g089880 0.5kb downstream 0.5kb downstream 3088 true chr3: 40854327-40857414 Medicago truncatula
Medtr3g089880 0.5kb downstream 0.5kb downstream 500 false chr3: 40856915-40857414 Medicago truncatula
Medtr3g089880 1.0kb upstream 1.0kb upstream 3588 true chr3: 40853327-40856914 Medicago truncatula
Medtr3g089880 1.0kb upstream 1.0kb upstream 1000 false chr3: 40853327-40854326 Medicago truncatula
Medtr3g089880 1.0kb downstream 1.0kb downstream 3588 true chr3: 40854327-40857914 Medicago truncatula
Medtr3g089880 1.0kb downstream 1.0kb downstream 1000 false chr3: 40856915-40857914 Medicago truncatula
Medtr3g089880 2.0kb upstream 2.0kb upstream 4588 true chr3: 40852327-40856914 Medicago truncatula
Medtr3g089880 2.0kb upstream 2.0kb upstream 2000 false chr3: 40852327-40854326 Medicago truncatula
Medtr3g089880 2.0kb downstream 2.0kb downstream 4588 true chr3: 40854327-40858914 Medicago truncatula
Medtr3g089880 2.0kb downstream 2.0kb downstream 2000 false chr3: 40856915-40858914 Medicago truncatula
Medtr3g089880 5.0kb upstream 5.0kb upstream 7588 true chr3: 40849327-40856914 Medicago truncatula
Medtr3g089880 5.0kb upstream 5.0kb upstream 5000 false chr3: 40849327-40854326 Medicago truncatula
Medtr3g089880 5.0kb downstream 5.0kb downstream 7588 true chr3: 40854327-40861914 Medicago truncatula
Medtr3g089880 5.0kb downstream 5.0kb downstream 5000 false chr3: 40856915-40861914 Medicago truncatula
Medtr3g089880 10.0kb upstream 10.0kb upstream 12588 true chr3: 40844327-40856914 Medicago truncatula
Medtr3g089880 10.0kb upstream 10.0kb upstream 10000 false chr3: 40844327-40854326 Medicago truncatula
Medtr3g089880 10.0kb downstream 10.0kb downstream 12588 true chr3: 40854327-40866914 Medicago truncatula
Medtr3g089880 10.0kb downstream 10.0kb downstream 10000 false chr3: 40856915-40866914 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302792 5265 Fabidae View MSA
124061918 5270 Rosid View MSA
123736716 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.879        
cufflinks 2.541        
cufflinks 3.698        
cufflinks 0.363       Low
cufflinks 3.864        
cufflinks 0.609       Low
cufflinks 1.514        
cufflinks 2.73        
cufflinks 1.015        

0 Strain