Gene : Medtr3g090900 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR30603:SF4 - RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL Description:  RNA polymerase sigma factor
Genomic Order:  4817 Name:  ? Medtr3g090900
Secondary Identifier:  ? PAC:31060573
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g090900 0.5kb upstream 0.5kb upstream 5707 true chr3: 41273549-41279255 Medicago truncatula
Medtr3g090900 0.5kb upstream 0.5kb upstream 500 false chr3: 41273549-41274048 Medicago truncatula
Medtr3g090900 0.5kb downstream 0.5kb downstream 5707 true chr3: 41274049-41279755 Medicago truncatula
Medtr3g090900 0.5kb downstream 0.5kb downstream 500 false chr3: 41279256-41279755 Medicago truncatula
Medtr3g090900 1.0kb upstream 1.0kb upstream 6207 true chr3: 41273049-41279255 Medicago truncatula
Medtr3g090900 1.0kb upstream 1.0kb upstream 1000 false chr3: 41273049-41274048 Medicago truncatula
Medtr3g090900 1.0kb downstream 1.0kb downstream 6207 true chr3: 41274049-41280255 Medicago truncatula
Medtr3g090900 1.0kb downstream 1.0kb downstream 1000 false chr3: 41279256-41280255 Medicago truncatula
Medtr3g090900 2.0kb upstream 2.0kb upstream 7207 true chr3: 41272049-41279255 Medicago truncatula
Medtr3g090900 2.0kb upstream 2.0kb upstream 2000 false chr3: 41272049-41274048 Medicago truncatula
Medtr3g090900 2.0kb downstream 2.0kb downstream 7207 true chr3: 41274049-41281255 Medicago truncatula
Medtr3g090900 2.0kb downstream 2.0kb downstream 2000 false chr3: 41279256-41281255 Medicago truncatula
Medtr3g090900 5.0kb upstream 5.0kb upstream 10207 true chr3: 41269049-41279255 Medicago truncatula
Medtr3g090900 5.0kb upstream 5.0kb upstream 5000 false chr3: 41269049-41274048 Medicago truncatula
Medtr3g090900 5.0kb downstream 5.0kb downstream 10207 true chr3: 41274049-41284255 Medicago truncatula
Medtr3g090900 5.0kb downstream 5.0kb downstream 5000 false chr3: 41279256-41284255 Medicago truncatula
Medtr3g090900 10.0kb upstream 10.0kb upstream 15207 true chr3: 41264049-41279255 Medicago truncatula
Medtr3g090900 10.0kb upstream 10.0kb upstream 10000 false chr3: 41264049-41274048 Medicago truncatula
Medtr3g090900 10.0kb downstream 10.0kb downstream 15207 true chr3: 41274049-41289255 Medicago truncatula
Medtr3g090900 10.0kb downstream 10.0kb downstream 10000 false chr3: 41279256-41289255 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026363 5273 Angiosperm View MSA
122311905 5265 Fabidae View MSA
124065012 5270 Rosid View MSA
123740689 5271 Pentapetalae View MSA
122788659 5272 Eudicot View MSA
121349199 5274 Embryophyte View MSA
123381214 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.02     Low Low
cufflinks 8.43       High
cufflinks 5.074        
cufflinks 0.238        
cufflinks 5.798        
cufflinks 0.09     Low  
cufflinks 0.055     Low  
cufflinks 7.382       High
cufflinks 0.153        

0 Strain