Gene : Medtr3g091850 M. truncatula Mt4.0v1
Defline:  (1 of 2) PF09341 - Transcription factor Pcc1 (Pcc1) Description:  transcription factor Pcc1
Genomic Order:  4895 Name:  ? Medtr3g091850
Secondary Identifier:  ? PAC:31058655
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g091850 0.5kb upstream 0.5kb upstream 3443 true chr3: 41907589-41911031 Medicago truncatula
Medtr3g091850 0.5kb upstream 0.5kb upstream 500 false chr3: 41910532-41911031 Medicago truncatula
Medtr3g091850 0.5kb downstream 0.5kb downstream 3443 true chr3: 41907089-41910531 Medicago truncatula
Medtr3g091850 0.5kb downstream 0.5kb downstream 500 false chr3: 41907089-41907588 Medicago truncatula
Medtr3g091850 1.0kb upstream 1.0kb upstream 3943 true chr3: 41907589-41911531 Medicago truncatula
Medtr3g091850 1.0kb upstream 1.0kb upstream 1000 false chr3: 41910532-41911531 Medicago truncatula
Medtr3g091850 1.0kb downstream 1.0kb downstream 3943 true chr3: 41906589-41910531 Medicago truncatula
Medtr3g091850 1.0kb downstream 1.0kb downstream 1000 false chr3: 41906589-41907588 Medicago truncatula
Medtr3g091850 2.0kb upstream 2.0kb upstream 4943 true chr3: 41907589-41912531 Medicago truncatula
Medtr3g091850 2.0kb upstream 2.0kb upstream 2000 false chr3: 41910532-41912531 Medicago truncatula
Medtr3g091850 2.0kb downstream 2.0kb downstream 4943 true chr3: 41905589-41910531 Medicago truncatula
Medtr3g091850 2.0kb downstream 2.0kb downstream 2000 false chr3: 41905589-41907588 Medicago truncatula
Medtr3g091850 5.0kb upstream 5.0kb upstream 7943 true chr3: 41907589-41915531 Medicago truncatula
Medtr3g091850 5.0kb upstream 5.0kb upstream 5000 false chr3: 41910532-41915531 Medicago truncatula
Medtr3g091850 5.0kb downstream 5.0kb downstream 7943 true chr3: 41902589-41910531 Medicago truncatula
Medtr3g091850 5.0kb downstream 5.0kb downstream 5000 false chr3: 41902589-41907588 Medicago truncatula
Medtr3g091850 10.0kb upstream 10.0kb upstream 12943 true chr3: 41907589-41920531 Medicago truncatula
Medtr3g091850 10.0kb upstream 10.0kb upstream 10000 false chr3: 41910532-41920531 Medicago truncatula
Medtr3g091850 10.0kb downstream 10.0kb downstream 12943 true chr3: 41897589-41910531 Medicago truncatula
Medtr3g091850 10.0kb downstream 10.0kb downstream 10000 false chr3: 41897589-41907588 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311807 5265 Fabidae View MSA
124050256 5270 Rosid View MSA
123736925 5271 Pentapetalae View MSA
122787092 5272 Eudicot View MSA
122043690 5273 Angiosperm View MSA
121347192 5274 Embryophyte View MSA
123380508 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.727       High
cufflinks 0.959       Low
cufflinks 2.044        
cufflinks 1.917        
cufflinks 1.378        
cufflinks 1.397        
cufflinks 1.791        
cufflinks 1.335        
cufflinks 1.437        

0 Strain