Gene : Medtr3g091570 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR12526:SF17 - STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC Description:  starch synthase 2/amyloplastic protein
Genomic Order:  4866 Name:  ? Medtr3g091570
Secondary Identifier:  ? PAC:31053565
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula GLYCOGENSYNTH-PWY Medicago truncatula pathologic  
Mtruncatula PWY-622 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g091570 0.5kb upstream 0.5kb upstream 8267 true chr3: 41674119-41682385 Medicago truncatula
Medtr3g091570 0.5kb upstream 0.5kb upstream 500 false chr3: 41674119-41674618 Medicago truncatula
Medtr3g091570 0.5kb downstream 0.5kb downstream 8267 true chr3: 41674619-41682885 Medicago truncatula
Medtr3g091570 0.5kb downstream 0.5kb downstream 500 false chr3: 41682386-41682885 Medicago truncatula
Medtr3g091570 1.0kb upstream 1.0kb upstream 8767 true chr3: 41673619-41682385 Medicago truncatula
Medtr3g091570 1.0kb upstream 1.0kb upstream 1000 false chr3: 41673619-41674618 Medicago truncatula
Medtr3g091570 1.0kb downstream 1.0kb downstream 8767 true chr3: 41674619-41683385 Medicago truncatula
Medtr3g091570 1.0kb downstream 1.0kb downstream 1000 false chr3: 41682386-41683385 Medicago truncatula
Medtr3g091570 2.0kb upstream 2.0kb upstream 9767 true chr3: 41672619-41682385 Medicago truncatula
Medtr3g091570 2.0kb upstream 2.0kb upstream 2000 false chr3: 41672619-41674618 Medicago truncatula
Medtr3g091570 2.0kb downstream 2.0kb downstream 9767 true chr3: 41674619-41684385 Medicago truncatula
Medtr3g091570 2.0kb downstream 2.0kb downstream 2000 false chr3: 41682386-41684385 Medicago truncatula
Medtr3g091570 5.0kb upstream 5.0kb upstream 12767 true chr3: 41669619-41682385 Medicago truncatula
Medtr3g091570 5.0kb upstream 5.0kb upstream 5000 false chr3: 41669619-41674618 Medicago truncatula
Medtr3g091570 5.0kb downstream 5.0kb downstream 12767 true chr3: 41674619-41687385 Medicago truncatula
Medtr3g091570 5.0kb downstream 5.0kb downstream 5000 false chr3: 41682386-41687385 Medicago truncatula
Medtr3g091570 10.0kb upstream 10.0kb upstream 17767 true chr3: 41664619-41682385 Medicago truncatula
Medtr3g091570 10.0kb upstream 10.0kb upstream 10000 false chr3: 41664619-41674618 Medicago truncatula
Medtr3g091570 10.0kb downstream 10.0kb downstream 17767 true chr3: 41674619-41692385 Medicago truncatula
Medtr3g091570 10.0kb downstream 10.0kb downstream 10000 false chr3: 41682386-41692385 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302425 5265 Fabidae View MSA
124060940 5270 Rosid View MSA
123737274 5271 Pentapetalae View MSA
122791286 5272 Eudicot View MSA
122042634 5273 Angiosperm View MSA
121343835 5274 Embryophyte View MSA
123426751 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.285        
cufflinks 11.493     High High
cufflinks 9.184        
cufflinks 2.026        
cufflinks 10.584     High High
cufflinks 0.755       Low
cufflinks 2.792        
cufflinks 8.761        
cufflinks 2.747        

0 Strain