Gene : Medtr3g084360 M. truncatula Mt4.0v1
Defline:  (1 of 93) 3.2.1.15 - Polygalacturonase / Pectinase Description:  polygalacturonase/glycoside hydrolase family protein
Genomic Order:  4380 Name:  ? Medtr3g084360
Secondary Identifier:  ? PAC:31059111
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1081 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g084360 0.5kb upstream 0.5kb upstream 2348 true chr3: 38088685-38091032 Medicago truncatula
Medtr3g084360 0.5kb upstream 0.5kb upstream 500 false chr3: 38088685-38089184 Medicago truncatula
Medtr3g084360 0.5kb downstream 0.5kb downstream 2348 true chr3: 38089185-38091532 Medicago truncatula
Medtr3g084360 0.5kb downstream 0.5kb downstream 500 false chr3: 38091033-38091532 Medicago truncatula
Medtr3g084360 1.0kb upstream 1.0kb upstream 2848 true chr3: 38088185-38091032 Medicago truncatula
Medtr3g084360 1.0kb upstream 1.0kb upstream 1000 false chr3: 38088185-38089184 Medicago truncatula
Medtr3g084360 1.0kb downstream 1.0kb downstream 2848 true chr3: 38089185-38092032 Medicago truncatula
Medtr3g084360 1.0kb downstream 1.0kb downstream 1000 false chr3: 38091033-38092032 Medicago truncatula
Medtr3g084360 2.0kb upstream 2.0kb upstream 3848 true chr3: 38087185-38091032 Medicago truncatula
Medtr3g084360 2.0kb upstream 2.0kb upstream 2000 false chr3: 38087185-38089184 Medicago truncatula
Medtr3g084360 2.0kb downstream 2.0kb downstream 3848 true chr3: 38089185-38093032 Medicago truncatula
Medtr3g084360 2.0kb downstream 2.0kb downstream 2000 false chr3: 38091033-38093032 Medicago truncatula
Medtr3g084360 5.0kb upstream 5.0kb upstream 6848 true chr3: 38084185-38091032 Medicago truncatula
Medtr3g084360 5.0kb upstream 5.0kb upstream 5000 false chr3: 38084185-38089184 Medicago truncatula
Medtr3g084360 5.0kb downstream 5.0kb downstream 6848 true chr3: 38089185-38096032 Medicago truncatula
Medtr3g084360 5.0kb downstream 5.0kb downstream 5000 false chr3: 38091033-38096032 Medicago truncatula
Medtr3g084360 10.0kb upstream 10.0kb upstream 11848 true chr3: 38079185-38091032 Medicago truncatula
Medtr3g084360 10.0kb upstream 10.0kb upstream 10000 false chr3: 38079185-38089184 Medicago truncatula
Medtr3g084360 10.0kb downstream 10.0kb downstream 11848 true chr3: 38089185-38101032 Medicago truncatula
Medtr3g084360 10.0kb downstream 10.0kb downstream 10000 false chr3: 38091033-38101032 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314178 5265 Fabidae View MSA
124070803 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain