Gene : Medtr3g084310 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11680//PTHR11680:SF11 - SERINE HYDROXYMETHYLTRANSFERASE Description:  serine transhydroxymethyltransferase
Genomic Order:  4377 Name:  ? Medtr3g084310
Secondary Identifier:  ? PAC:31061467
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4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula GLYSYN-PWY Medicago truncatula pathologic  
Mtruncatula PWY-2161 Medicago truncatula pathologic  
Mtruncatula PWY-3841 Medicago truncatula pathologic  
Mtruncatula SER-GLYSYN-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g084310 0.5kb upstream 0.5kb upstream 2866 true chr3: 38067331-38070196 Medicago truncatula
Medtr3g084310 0.5kb upstream 0.5kb upstream 500 false chr3: 38069697-38070196 Medicago truncatula
Medtr3g084310 0.5kb downstream 0.5kb downstream 2866 true chr3: 38066831-38069696 Medicago truncatula
Medtr3g084310 0.5kb downstream 0.5kb downstream 500 false chr3: 38066831-38067330 Medicago truncatula
Medtr3g084310 1.0kb upstream 1.0kb upstream 3366 true chr3: 38067331-38070696 Medicago truncatula
Medtr3g084310 1.0kb upstream 1.0kb upstream 1000 false chr3: 38069697-38070696 Medicago truncatula
Medtr3g084310 1.0kb downstream 1.0kb downstream 3366 true chr3: 38066331-38069696 Medicago truncatula
Medtr3g084310 1.0kb downstream 1.0kb downstream 1000 false chr3: 38066331-38067330 Medicago truncatula
Medtr3g084310 2.0kb upstream 2.0kb upstream 4366 true chr3: 38067331-38071696 Medicago truncatula
Medtr3g084310 2.0kb upstream 2.0kb upstream 2000 false chr3: 38069697-38071696 Medicago truncatula
Medtr3g084310 2.0kb downstream 2.0kb downstream 4366 true chr3: 38065331-38069696 Medicago truncatula
Medtr3g084310 2.0kb downstream 2.0kb downstream 2000 false chr3: 38065331-38067330 Medicago truncatula
Medtr3g084310 5.0kb upstream 5.0kb upstream 7366 true chr3: 38067331-38074696 Medicago truncatula
Medtr3g084310 5.0kb upstream 5.0kb upstream 5000 false chr3: 38069697-38074696 Medicago truncatula
Medtr3g084310 5.0kb downstream 5.0kb downstream 7366 true chr3: 38062331-38069696 Medicago truncatula
Medtr3g084310 5.0kb downstream 5.0kb downstream 5000 false chr3: 38062331-38067330 Medicago truncatula
Medtr3g084310 10.0kb upstream 10.0kb upstream 12366 true chr3: 38067331-38079696 Medicago truncatula
Medtr3g084310 10.0kb upstream 10.0kb upstream 10000 false chr3: 38069697-38079696 Medicago truncatula
Medtr3g084310 10.0kb downstream 10.0kb downstream 12366 true chr3: 38057331-38069696 Medicago truncatula
Medtr3g084310 10.0kb downstream 10.0kb downstream 10000 false chr3: 38057331-38067330 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313594 5265 Fabidae View MSA
124067933 5270 Rosid View MSA
123746459 5271 Pentapetalae View MSA
122786293 5272 Eudicot View MSA
122042145 5273 Angiosperm View MSA
121347378 5274 Embryophyte View MSA
123426459 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.814     High  
cufflinks 22.39     High  
cufflinks 13.62     High Low
cufflinks 72.372     High High
cufflinks 22.992     High  
cufflinks 40.037     High  
cufflinks 25.775     High  
cufflinks 14.323     High Low
cufflinks 41.723     High  

0 Strain