Gene : Medtr3g084440 M. truncatula Mt4.0v1
Defline:  (1 of 19) PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  pentatricopeptide (PPR) repeat protein
Genomic Order:  4386 Name:  ? Medtr3g084440
Secondary Identifier:  ? PAC:31055237
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g084440 0.5kb upstream 0.5kb upstream 2948 true chr3: 38114203-38117150 Medicago truncatula
Medtr3g084440 0.5kb upstream 0.5kb upstream 500 false chr3: 38114203-38114702 Medicago truncatula
Medtr3g084440 0.5kb downstream 0.5kb downstream 2948 true chr3: 38114703-38117650 Medicago truncatula
Medtr3g084440 0.5kb downstream 0.5kb downstream 500 false chr3: 38117151-38117650 Medicago truncatula
Medtr3g084440 1.0kb upstream 1.0kb upstream 3448 true chr3: 38113703-38117150 Medicago truncatula
Medtr3g084440 1.0kb upstream 1.0kb upstream 1000 false chr3: 38113703-38114702 Medicago truncatula
Medtr3g084440 1.0kb downstream 1.0kb downstream 3448 true chr3: 38114703-38118150 Medicago truncatula
Medtr3g084440 1.0kb downstream 1.0kb downstream 1000 false chr3: 38117151-38118150 Medicago truncatula
Medtr3g084440 2.0kb upstream 2.0kb upstream 4448 true chr3: 38112703-38117150 Medicago truncatula
Medtr3g084440 2.0kb upstream 2.0kb upstream 2000 false chr3: 38112703-38114702 Medicago truncatula
Medtr3g084440 2.0kb downstream 2.0kb downstream 4448 true chr3: 38114703-38119150 Medicago truncatula
Medtr3g084440 2.0kb downstream 2.0kb downstream 2000 false chr3: 38117151-38119150 Medicago truncatula
Medtr3g084440 5.0kb upstream 5.0kb upstream 7448 true chr3: 38109703-38117150 Medicago truncatula
Medtr3g084440 5.0kb upstream 5.0kb upstream 5000 false chr3: 38109703-38114702 Medicago truncatula
Medtr3g084440 5.0kb downstream 5.0kb downstream 7448 true chr3: 38114703-38122150 Medicago truncatula
Medtr3g084440 5.0kb downstream 5.0kb downstream 5000 false chr3: 38117151-38122150 Medicago truncatula
Medtr3g084440 10.0kb upstream 10.0kb upstream 12448 true chr3: 38104703-38117150 Medicago truncatula
Medtr3g084440 10.0kb upstream 10.0kb upstream 10000 false chr3: 38104703-38114702 Medicago truncatula
Medtr3g084440 10.0kb downstream 10.0kb downstream 12448 true chr3: 38114703-38127150 Medicago truncatula
Medtr3g084440 10.0kb downstream 10.0kb downstream 10000 false chr3: 38117151-38127150 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026319 5273 Angiosperm View MSA
122300758 5265 Fabidae View MSA
124064150 5270 Rosid View MSA
123738212 5271 Pentapetalae View MSA
122786215 5272 Eudicot View MSA
121296277 5274 Embryophyte View MSA
123334471 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.417        
cufflinks 0.123       Low
cufflinks 0.141       Low
cufflinks 0.827       High
cufflinks 0.56        
cufflinks 0.175        
cufflinks 0.637        
cufflinks 0.178        
cufflinks 0.968       High

0 Strain