Gene : Medtr3g084800 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11390:SF20 - DNA TOPOISOMERASE 3-BETA-1 Description:  DNA topoisomerase I
Genomic Order:  4409 Name:  ? Medtr3g084800
Secondary Identifier:  ? PAC:31056282
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g084800 0.5kb upstream 0.5kb upstream 12005 true chr3: 38296920-38308924 Medicago truncatula
Medtr3g084800 0.5kb upstream 0.5kb upstream 500 false chr3: 38296920-38297419 Medicago truncatula
Medtr3g084800 0.5kb downstream 0.5kb downstream 12005 true chr3: 38297420-38309424 Medicago truncatula
Medtr3g084800 0.5kb downstream 0.5kb downstream 500 false chr3: 38308925-38309424 Medicago truncatula
Medtr3g084800 1.0kb upstream 1.0kb upstream 12505 true chr3: 38296420-38308924 Medicago truncatula
Medtr3g084800 1.0kb upstream 1.0kb upstream 1000 false chr3: 38296420-38297419 Medicago truncatula
Medtr3g084800 1.0kb downstream 1.0kb downstream 12505 true chr3: 38297420-38309924 Medicago truncatula
Medtr3g084800 1.0kb downstream 1.0kb downstream 1000 false chr3: 38308925-38309924 Medicago truncatula
Medtr3g084800 2.0kb upstream 2.0kb upstream 13505 true chr3: 38295420-38308924 Medicago truncatula
Medtr3g084800 2.0kb upstream 2.0kb upstream 2000 false chr3: 38295420-38297419 Medicago truncatula
Medtr3g084800 2.0kb downstream 2.0kb downstream 13505 true chr3: 38297420-38310924 Medicago truncatula
Medtr3g084800 2.0kb downstream 2.0kb downstream 2000 false chr3: 38308925-38310924 Medicago truncatula
Medtr3g084800 5.0kb upstream 5.0kb upstream 16505 true chr3: 38292420-38308924 Medicago truncatula
Medtr3g084800 5.0kb upstream 5.0kb upstream 5000 false chr3: 38292420-38297419 Medicago truncatula
Medtr3g084800 5.0kb downstream 5.0kb downstream 16505 true chr3: 38297420-38313924 Medicago truncatula
Medtr3g084800 5.0kb downstream 5.0kb downstream 5000 false chr3: 38308925-38313924 Medicago truncatula
Medtr3g084800 10.0kb upstream 10.0kb upstream 21505 true chr3: 38287420-38308924 Medicago truncatula
Medtr3g084800 10.0kb upstream 10.0kb upstream 10000 false chr3: 38287420-38297419 Medicago truncatula
Medtr3g084800 10.0kb downstream 10.0kb downstream 21505 true chr3: 38297420-38318924 Medicago truncatula
Medtr3g084800 10.0kb downstream 10.0kb downstream 10000 false chr3: 38308925-38318924 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041072 5273 Angiosperm View MSA
122299125 5265 Fabidae View MSA
124073148 5270 Rosid View MSA
123740785 5271 Pentapetalae View MSA
122785761 5272 Eudicot View MSA
121346575 5274 Embryophyte View MSA
123425013 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.324        
cufflinks 0.235        
cufflinks 0.309        
cufflinks 0.095        
cufflinks 0.404       High
cufflinks 0.031     Low Low
cufflinks 0.16        
cufflinks 0.263        
cufflinks 0.183        

0 Strain