Gene : Medtr3g084470 M. truncatula Mt4.0v1
Defline:  (1 of 3) 6.2.1.20 - Long-chain-fatty-acid--[acyl-carrier-protein] ligase / Acyl-[acyl-carrier-protein] synthetase Description:  long-chain-fatty-acid CoA ligase (AMP-forming)
Genomic Order:  4388 Name:  ? Medtr3g084470
Secondary Identifier:  ? PAC:31056166
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6622 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g084470 0.5kb upstream 0.5kb upstream 10513 true chr3: 38127107-38137619 Medicago truncatula
Medtr3g084470 0.5kb upstream 0.5kb upstream 500 false chr3: 38137120-38137619 Medicago truncatula
Medtr3g084470 0.5kb downstream 0.5kb downstream 10513 true chr3: 38126607-38137119 Medicago truncatula
Medtr3g084470 0.5kb downstream 0.5kb downstream 500 false chr3: 38126607-38127106 Medicago truncatula
Medtr3g084470 1.0kb upstream 1.0kb upstream 11013 true chr3: 38127107-38138119 Medicago truncatula
Medtr3g084470 1.0kb upstream 1.0kb upstream 1000 false chr3: 38137120-38138119 Medicago truncatula
Medtr3g084470 1.0kb downstream 1.0kb downstream 11013 true chr3: 38126107-38137119 Medicago truncatula
Medtr3g084470 1.0kb downstream 1.0kb downstream 1000 false chr3: 38126107-38127106 Medicago truncatula
Medtr3g084470 2.0kb upstream 2.0kb upstream 12013 true chr3: 38127107-38139119 Medicago truncatula
Medtr3g084470 2.0kb upstream 2.0kb upstream 2000 false chr3: 38137120-38139119 Medicago truncatula
Medtr3g084470 2.0kb downstream 2.0kb downstream 12013 true chr3: 38125107-38137119 Medicago truncatula
Medtr3g084470 2.0kb downstream 2.0kb downstream 2000 false chr3: 38125107-38127106 Medicago truncatula
Medtr3g084470 5.0kb upstream 5.0kb upstream 15013 true chr3: 38127107-38142119 Medicago truncatula
Medtr3g084470 5.0kb upstream 5.0kb upstream 5000 false chr3: 38137120-38142119 Medicago truncatula
Medtr3g084470 5.0kb downstream 5.0kb downstream 15013 true chr3: 38122107-38137119 Medicago truncatula
Medtr3g084470 5.0kb downstream 5.0kb downstream 5000 false chr3: 38122107-38127106 Medicago truncatula
Medtr3g084470 10.0kb upstream 10.0kb upstream 20013 true chr3: 38127107-38147119 Medicago truncatula
Medtr3g084470 10.0kb upstream 10.0kb upstream 10000 false chr3: 38137120-38147119 Medicago truncatula
Medtr3g084470 10.0kb downstream 10.0kb downstream 20013 true chr3: 38117107-38137119 Medicago truncatula
Medtr3g084470 10.0kb downstream 10.0kb downstream 10000 false chr3: 38117107-38127106 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310113 5265 Fabidae View MSA
124063017 5270 Rosid View MSA
123740730 5271 Pentapetalae View MSA
122788844 5272 Eudicot View MSA
122041588 5273 Angiosperm View MSA
121344484 5274 Embryophyte View MSA
123427454 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.207       Low
cufflinks 1.966        
cufflinks 2.305       High
cufflinks 0.377       Low
cufflinks 2.178        
cufflinks 0.582        
cufflinks 0.855        
cufflinks 1.867        
cufflinks 0.989        

0 Strain