Gene : Medtr3g085290 M. truncatula Mt4.0v1
Defline:  (1 of 1) 1.14.11.33//4.2.99.18 - DNA oxidative demethylase / Alkylated DNA repair protein // DNA-(apurinic or apyrimidinic site) lyase / Phage-T4 UV endonuclease Description:  2OG-Fe(II) oxygenase family protein
Genomic Order:  4444 Name:  ? Medtr3g085290
Secondary Identifier:  ? PAC:31055007
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g085290 0.5kb upstream 0.5kb upstream 6169 true chr3: 38538955-38545123 Medicago truncatula
Medtr3g085290 0.5kb upstream 0.5kb upstream 500 false chr3: 38538955-38539454 Medicago truncatula
Medtr3g085290 0.5kb downstream 0.5kb downstream 6169 true chr3: 38539455-38545623 Medicago truncatula
Medtr3g085290 0.5kb downstream 0.5kb downstream 500 false chr3: 38545124-38545623 Medicago truncatula
Medtr3g085290 1.0kb upstream 1.0kb upstream 6669 true chr3: 38538455-38545123 Medicago truncatula
Medtr3g085290 1.0kb upstream 1.0kb upstream 1000 false chr3: 38538455-38539454 Medicago truncatula
Medtr3g085290 1.0kb downstream 1.0kb downstream 6669 true chr3: 38539455-38546123 Medicago truncatula
Medtr3g085290 1.0kb downstream 1.0kb downstream 1000 false chr3: 38545124-38546123 Medicago truncatula
Medtr3g085290 2.0kb upstream 2.0kb upstream 7669 true chr3: 38537455-38545123 Medicago truncatula
Medtr3g085290 2.0kb upstream 2.0kb upstream 2000 false chr3: 38537455-38539454 Medicago truncatula
Medtr3g085290 2.0kb downstream 2.0kb downstream 7669 true chr3: 38539455-38547123 Medicago truncatula
Medtr3g085290 2.0kb downstream 2.0kb downstream 2000 false chr3: 38545124-38547123 Medicago truncatula
Medtr3g085290 5.0kb upstream 5.0kb upstream 10669 true chr3: 38534455-38545123 Medicago truncatula
Medtr3g085290 5.0kb upstream 5.0kb upstream 5000 false chr3: 38534455-38539454 Medicago truncatula
Medtr3g085290 5.0kb downstream 5.0kb downstream 10669 true chr3: 38539455-38550123 Medicago truncatula
Medtr3g085290 5.0kb downstream 5.0kb downstream 5000 false chr3: 38545124-38550123 Medicago truncatula
Medtr3g085290 10.0kb upstream 10.0kb upstream 15669 true chr3: 38529455-38545123 Medicago truncatula
Medtr3g085290 10.0kb upstream 10.0kb upstream 10000 false chr3: 38529455-38539454 Medicago truncatula
Medtr3g085290 10.0kb downstream 10.0kb downstream 15669 true chr3: 38539455-38555123 Medicago truncatula
Medtr3g085290 10.0kb downstream 10.0kb downstream 10000 false chr3: 38545124-38555123 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301294 5265 Fabidae View MSA
124069027 5270 Rosid View MSA
123737272 5271 Pentapetalae View MSA
122785941 5272 Eudicot View MSA
122044879 5273 Angiosperm View MSA
121344923 5274 Embryophyte View MSA
123425704 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.527        
cufflinks 2.212        
cufflinks 3.075       High
cufflinks 1.576        
cufflinks 2.931       High
cufflinks 1.25       Low
cufflinks 1.908        
cufflinks 2.582        
cufflinks 1.525        

0 Strain