Gene : Medtr3g086220 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR13164:SF7 - COP1-INTERACTING PROTEIN 4-RELATED Description:  hypothetical protein
Genomic Order:  4516 Name:  ? Medtr3g086220
Secondary Identifier:  ? PAC:31057055
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g086220 0.5kb upstream 0.5kb upstream 6447 true chr3: 39010113-39016559 Medicago truncatula
Medtr3g086220 0.5kb upstream 0.5kb upstream 500 false chr3: 39010113-39010612 Medicago truncatula
Medtr3g086220 0.5kb downstream 0.5kb downstream 6447 true chr3: 39010613-39017059 Medicago truncatula
Medtr3g086220 0.5kb downstream 0.5kb downstream 500 false chr3: 39016560-39017059 Medicago truncatula
Medtr3g086220 1.0kb upstream 1.0kb upstream 6947 true chr3: 39009613-39016559 Medicago truncatula
Medtr3g086220 1.0kb upstream 1.0kb upstream 1000 false chr3: 39009613-39010612 Medicago truncatula
Medtr3g086220 1.0kb downstream 1.0kb downstream 6947 true chr3: 39010613-39017559 Medicago truncatula
Medtr3g086220 1.0kb downstream 1.0kb downstream 1000 false chr3: 39016560-39017559 Medicago truncatula
Medtr3g086220 2.0kb upstream 2.0kb upstream 7947 true chr3: 39008613-39016559 Medicago truncatula
Medtr3g086220 2.0kb upstream 2.0kb upstream 2000 false chr3: 39008613-39010612 Medicago truncatula
Medtr3g086220 2.0kb downstream 2.0kb downstream 7947 true chr3: 39010613-39018559 Medicago truncatula
Medtr3g086220 2.0kb downstream 2.0kb downstream 2000 false chr3: 39016560-39018559 Medicago truncatula
Medtr3g086220 5.0kb upstream 5.0kb upstream 10947 true chr3: 39005613-39016559 Medicago truncatula
Medtr3g086220 5.0kb upstream 5.0kb upstream 5000 false chr3: 39005613-39010612 Medicago truncatula
Medtr3g086220 5.0kb downstream 5.0kb downstream 10947 true chr3: 39010613-39021559 Medicago truncatula
Medtr3g086220 5.0kb downstream 5.0kb downstream 5000 false chr3: 39016560-39021559 Medicago truncatula
Medtr3g086220 10.0kb upstream 10.0kb upstream 15947 true chr3: 39000613-39016559 Medicago truncatula
Medtr3g086220 10.0kb upstream 10.0kb upstream 10000 false chr3: 39000613-39010612 Medicago truncatula
Medtr3g086220 10.0kb downstream 10.0kb downstream 15947 true chr3: 39010613-39026559 Medicago truncatula
Medtr3g086220 10.0kb downstream 10.0kb downstream 10000 false chr3: 39016560-39026559 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299394 5265 Fabidae View MSA
124069381 5270 Rosid View MSA
123743976 5271 Pentapetalae View MSA
122793189 5272 Eudicot View MSA
122042859 5273 Angiosperm View MSA
121310036 5274 Embryophyte View MSA
123347639 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.767       High
cufflinks 1.014        
cufflinks 1.556        
cufflinks 0.249       Low
cufflinks 2.085       High
cufflinks 0.32       Low
cufflinks 0.488        
cufflinks 1.242        
cufflinks 0.327       Low

0 Strain