Gene : Medtr3g086230 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR34790:SF1 - PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC Description:  photosystem II core complex family psbY protein
Genomic Order:  4517 Name:  ? Medtr3g086230
Secondary Identifier:  ? PAC:31059141
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g086230 0.5kb upstream 0.5kb upstream 1439 true chr3: 39016812-39018250 Medicago truncatula
Medtr3g086230 0.5kb upstream 0.5kb upstream 500 false chr3: 39017751-39018250 Medicago truncatula
Medtr3g086230 0.5kb downstream 0.5kb downstream 1439 true chr3: 39016312-39017750 Medicago truncatula
Medtr3g086230 0.5kb downstream 0.5kb downstream 500 false chr3: 39016312-39016811 Medicago truncatula
Medtr3g086230 1.0kb upstream 1.0kb upstream 1939 true chr3: 39016812-39018750 Medicago truncatula
Medtr3g086230 1.0kb upstream 1.0kb upstream 1000 false chr3: 39017751-39018750 Medicago truncatula
Medtr3g086230 1.0kb downstream 1.0kb downstream 1939 true chr3: 39015812-39017750 Medicago truncatula
Medtr3g086230 1.0kb downstream 1.0kb downstream 1000 false chr3: 39015812-39016811 Medicago truncatula
Medtr3g086230 2.0kb upstream 2.0kb upstream 2939 true chr3: 39016812-39019750 Medicago truncatula
Medtr3g086230 2.0kb upstream 2.0kb upstream 2000 false chr3: 39017751-39019750 Medicago truncatula
Medtr3g086230 2.0kb downstream 2.0kb downstream 2939 true chr3: 39014812-39017750 Medicago truncatula
Medtr3g086230 2.0kb downstream 2.0kb downstream 2000 false chr3: 39014812-39016811 Medicago truncatula
Medtr3g086230 5.0kb upstream 5.0kb upstream 5939 true chr3: 39016812-39022750 Medicago truncatula
Medtr3g086230 5.0kb upstream 5.0kb upstream 5000 false chr3: 39017751-39022750 Medicago truncatula
Medtr3g086230 5.0kb downstream 5.0kb downstream 5939 true chr3: 39011812-39017750 Medicago truncatula
Medtr3g086230 5.0kb downstream 5.0kb downstream 5000 false chr3: 39011812-39016811 Medicago truncatula
Medtr3g086230 10.0kb upstream 10.0kb upstream 10939 true chr3: 39016812-39027750 Medicago truncatula
Medtr3g086230 10.0kb upstream 10.0kb upstream 10000 false chr3: 39017751-39027750 Medicago truncatula
Medtr3g086230 10.0kb downstream 10.0kb downstream 10939 true chr3: 39006812-39017750 Medicago truncatula
Medtr3g086230 10.0kb downstream 10.0kb downstream 10000 false chr3: 39006812-39016811 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300647 5265 Fabidae View MSA
124068149 5270 Rosid View MSA
123737018 5271 Pentapetalae View MSA
122795977 5272 Eudicot View MSA
122044260 5273 Angiosperm View MSA
121349394 5274 Embryophyte View MSA
123426328 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.964       Low
cufflinks 1235.428     High High
cufflinks 1448.547     High High
cufflinks 21.612     High  
cufflinks 1292.093     High High
cufflinks 20.704     High  
cufflinks 6.869        
cufflinks 1373.553     High High
cufflinks 5.932        

0 Strain