Gene : Medtr3g086160 M. truncatula Mt4.0v1
Defline:  (1 of 12) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Description:  RPM1-interacting protein 4 (RIN4) family protein
Genomic Order:  4511 Name:  ? Medtr3g086160
Secondary Identifier:  ? PAC:31056921
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g086160 0.5kb upstream 0.5kb upstream 782 true chr3: 38987727-38988508 Medicago truncatula
Medtr3g086160 0.5kb upstream 0.5kb upstream 500 false chr3: 38987727-38988226 Medicago truncatula
Medtr3g086160 0.5kb downstream 0.5kb downstream 782 true chr3: 38988227-38989008 Medicago truncatula
Medtr3g086160 0.5kb downstream 0.5kb downstream 500 false chr3: 38988509-38989008 Medicago truncatula
Medtr3g086160 1.0kb upstream 1.0kb upstream 1282 true chr3: 38987227-38988508 Medicago truncatula
Medtr3g086160 1.0kb upstream 1.0kb upstream 1000 false chr3: 38987227-38988226 Medicago truncatula
Medtr3g086160 1.0kb downstream 1.0kb downstream 1282 true chr3: 38988227-38989508 Medicago truncatula
Medtr3g086160 1.0kb downstream 1.0kb downstream 1000 false chr3: 38988509-38989508 Medicago truncatula
Medtr3g086160 2.0kb upstream 2.0kb upstream 2282 true chr3: 38986227-38988508 Medicago truncatula
Medtr3g086160 2.0kb upstream 2.0kb upstream 2000 false chr3: 38986227-38988226 Medicago truncatula
Medtr3g086160 2.0kb downstream 2.0kb downstream 2282 true chr3: 38988227-38990508 Medicago truncatula
Medtr3g086160 2.0kb downstream 2.0kb downstream 2000 false chr3: 38988509-38990508 Medicago truncatula
Medtr3g086160 5.0kb upstream 5.0kb upstream 5282 true chr3: 38983227-38988508 Medicago truncatula
Medtr3g086160 5.0kb upstream 5.0kb upstream 5000 false chr3: 38983227-38988226 Medicago truncatula
Medtr3g086160 5.0kb downstream 5.0kb downstream 5282 true chr3: 38988227-38993508 Medicago truncatula
Medtr3g086160 5.0kb downstream 5.0kb downstream 5000 false chr3: 38988509-38993508 Medicago truncatula
Medtr3g086160 10.0kb upstream 10.0kb upstream 10282 true chr3: 38978227-38988508 Medicago truncatula
Medtr3g086160 10.0kb upstream 10.0kb upstream 10000 false chr3: 38978227-38988226 Medicago truncatula
Medtr3g086160 10.0kb downstream 10.0kb downstream 10282 true chr3: 38988227-38998508 Medicago truncatula
Medtr3g086160 10.0kb downstream 10.0kb downstream 10000 false chr3: 38988509-38998508 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298040 5265 Fabidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.119        
cufflinks 0.048     Low Low
cufflinks 0.106        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.072        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.165       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain