Gene : Medtr3g087390 M. truncatula Mt4.0v1
Defline:  (1 of 35) PF05678 - VQ motif (VQ) Description:  VQ motif protein
Genomic Order:  4608 Name:  ? Medtr3g087390
Secondary Identifier:  ? PAC:31056308
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g087390 0.5kb upstream 0.5kb upstream 3083 true chr3: 39635830-39638912 Medicago truncatula
Medtr3g087390 0.5kb upstream 0.5kb upstream 500 false chr3: 39638413-39638912 Medicago truncatula
Medtr3g087390 0.5kb downstream 0.5kb downstream 3083 true chr3: 39635330-39638412 Medicago truncatula
Medtr3g087390 0.5kb downstream 0.5kb downstream 500 false chr3: 39635330-39635829 Medicago truncatula
Medtr3g087390 1.0kb upstream 1.0kb upstream 3583 true chr3: 39635830-39639412 Medicago truncatula
Medtr3g087390 1.0kb upstream 1.0kb upstream 1000 false chr3: 39638413-39639412 Medicago truncatula
Medtr3g087390 1.0kb downstream 1.0kb downstream 3583 true chr3: 39634830-39638412 Medicago truncatula
Medtr3g087390 1.0kb downstream 1.0kb downstream 1000 false chr3: 39634830-39635829 Medicago truncatula
Medtr3g087390 2.0kb upstream 2.0kb upstream 4583 true chr3: 39635830-39640412 Medicago truncatula
Medtr3g087390 2.0kb upstream 2.0kb upstream 2000 false chr3: 39638413-39640412 Medicago truncatula
Medtr3g087390 2.0kb downstream 2.0kb downstream 4583 true chr3: 39633830-39638412 Medicago truncatula
Medtr3g087390 2.0kb downstream 2.0kb downstream 2000 false chr3: 39633830-39635829 Medicago truncatula
Medtr3g087390 5.0kb upstream 5.0kb upstream 7583 true chr3: 39635830-39643412 Medicago truncatula
Medtr3g087390 5.0kb upstream 5.0kb upstream 5000 false chr3: 39638413-39643412 Medicago truncatula
Medtr3g087390 5.0kb downstream 5.0kb downstream 7583 true chr3: 39630830-39638412 Medicago truncatula
Medtr3g087390 5.0kb downstream 5.0kb downstream 5000 false chr3: 39630830-39635829 Medicago truncatula
Medtr3g087390 10.0kb upstream 10.0kb upstream 12583 true chr3: 39635830-39648412 Medicago truncatula
Medtr3g087390 10.0kb upstream 10.0kb upstream 10000 false chr3: 39638413-39648412 Medicago truncatula
Medtr3g087390 10.0kb downstream 10.0kb downstream 12583 true chr3: 39625830-39638412 Medicago truncatula
Medtr3g087390 10.0kb downstream 10.0kb downstream 10000 false chr3: 39625830-39635829 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311047 5265 Fabidae View MSA
124069975 5270 Rosid View MSA
123750267 5271 Pentapetalae View MSA
122794981 5272 Eudicot View MSA
122048174 5273 Angiosperm View MSA
121350948 5274 Embryophyte View MSA
123381944 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.434     High High
cufflinks 0.906        
cufflinks 0.824        
cufflinks 1.399        
cufflinks 1.196        
cufflinks 1.8        
cufflinks 5.962        
cufflinks 0.877        
cufflinks 4.054        

0 Strain