Gene : Medtr3g086980 M. truncatula Mt4.0v1
Defline:  (1 of 21) KOG0087 - GTPase Rab11/YPT3, small G protein superfamily Description:  RAB GTPase-like protein A1D
Genomic Order:  4573 Name:  ? Medtr3g086980
Secondary Identifier:  ? PAC:31060941
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g086980 0.5kb upstream 0.5kb upstream 4071 true chr3: 39431186-39435256 Medicago truncatula
Medtr3g086980 0.5kb upstream 0.5kb upstream 500 false chr3: 39434757-39435256 Medicago truncatula
Medtr3g086980 0.5kb downstream 0.5kb downstream 4071 true chr3: 39430686-39434756 Medicago truncatula
Medtr3g086980 0.5kb downstream 0.5kb downstream 500 false chr3: 39430686-39431185 Medicago truncatula
Medtr3g086980 1.0kb upstream 1.0kb upstream 4571 true chr3: 39431186-39435756 Medicago truncatula
Medtr3g086980 1.0kb upstream 1.0kb upstream 1000 false chr3: 39434757-39435756 Medicago truncatula
Medtr3g086980 1.0kb downstream 1.0kb downstream 4571 true chr3: 39430186-39434756 Medicago truncatula
Medtr3g086980 1.0kb downstream 1.0kb downstream 1000 false chr3: 39430186-39431185 Medicago truncatula
Medtr3g086980 2.0kb upstream 2.0kb upstream 5571 true chr3: 39431186-39436756 Medicago truncatula
Medtr3g086980 2.0kb upstream 2.0kb upstream 2000 false chr3: 39434757-39436756 Medicago truncatula
Medtr3g086980 2.0kb downstream 2.0kb downstream 5571 true chr3: 39429186-39434756 Medicago truncatula
Medtr3g086980 2.0kb downstream 2.0kb downstream 2000 false chr3: 39429186-39431185 Medicago truncatula
Medtr3g086980 5.0kb upstream 5.0kb upstream 8571 true chr3: 39431186-39439756 Medicago truncatula
Medtr3g086980 5.0kb upstream 5.0kb upstream 5000 false chr3: 39434757-39439756 Medicago truncatula
Medtr3g086980 5.0kb downstream 5.0kb downstream 8571 true chr3: 39426186-39434756 Medicago truncatula
Medtr3g086980 5.0kb downstream 5.0kb downstream 5000 false chr3: 39426186-39431185 Medicago truncatula
Medtr3g086980 10.0kb upstream 10.0kb upstream 13571 true chr3: 39431186-39444756 Medicago truncatula
Medtr3g086980 10.0kb upstream 10.0kb upstream 10000 false chr3: 39434757-39444756 Medicago truncatula
Medtr3g086980 10.0kb downstream 10.0kb downstream 13571 true chr3: 39421186-39434756 Medicago truncatula
Medtr3g086980 10.0kb downstream 10.0kb downstream 10000 false chr3: 39421186-39431185 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312719 5265 Fabidae View MSA
124067588 5270 Rosid View MSA
123750991 5271 Pentapetalae View MSA
122787491 5272 Eudicot View MSA
122047606 5273 Angiosperm View MSA
121351595 5274 Embryophyte View MSA
123426852 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.447       Low
cufflinks 1.751        
cufflinks 1.297        
cufflinks 2.51        
cufflinks 2.107        
cufflinks 1.469        
cufflinks 2.226        
cufflinks 1.069        
cufflinks 3.9       High

0 Strain