Gene : Medtr3g449340 M. truncatula Mt4.0v1
Defline:  (1 of 5) 5.1.3.1 - Ribulose-phosphate 3-epimerase / Xylulose phosphate 3-epimerase Description:  ribulose-phosphate 3-epimerase
Genomic Order:  1782 Name:  ? Medtr3g449340
Secondary Identifier:  ? PAC:31053783
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5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula CALVIN-PWY Medicago truncatula pathologic  
Mtruncatula NONOXIPENT-PWY Medicago truncatula pathologic  
Mtruncatula PENTOSE-P-PWY Medicago truncatula pathologic  
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-5723 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g449340 0.5kb upstream 0.5kb upstream 2116 true chr3: 16722564-16724679 Medicago truncatula
Medtr3g449340 0.5kb upstream 0.5kb upstream 500 false chr3: 16722564-16723063 Medicago truncatula
Medtr3g449340 0.5kb downstream 0.5kb downstream 2116 true chr3: 16723064-16725179 Medicago truncatula
Medtr3g449340 0.5kb downstream 0.5kb downstream 500 false chr3: 16724680-16725179 Medicago truncatula
Medtr3g449340 1.0kb upstream 1.0kb upstream 2616 true chr3: 16722064-16724679 Medicago truncatula
Medtr3g449340 1.0kb upstream 1.0kb upstream 1000 false chr3: 16722064-16723063 Medicago truncatula
Medtr3g449340 1.0kb downstream 1.0kb downstream 2616 true chr3: 16723064-16725679 Medicago truncatula
Medtr3g449340 1.0kb downstream 1.0kb downstream 1000 false chr3: 16724680-16725679 Medicago truncatula
Medtr3g449340 2.0kb upstream 2.0kb upstream 3616 true chr3: 16721064-16724679 Medicago truncatula
Medtr3g449340 2.0kb upstream 2.0kb upstream 2000 false chr3: 16721064-16723063 Medicago truncatula
Medtr3g449340 2.0kb downstream 2.0kb downstream 3616 true chr3: 16723064-16726679 Medicago truncatula
Medtr3g449340 2.0kb downstream 2.0kb downstream 2000 false chr3: 16724680-16726679 Medicago truncatula
Medtr3g449340 5.0kb upstream 5.0kb upstream 6616 true chr3: 16718064-16724679 Medicago truncatula
Medtr3g449340 5.0kb upstream 5.0kb upstream 5000 false chr3: 16718064-16723063 Medicago truncatula
Medtr3g449340 5.0kb downstream 5.0kb downstream 6616 true chr3: 16723064-16729679 Medicago truncatula
Medtr3g449340 5.0kb downstream 5.0kb downstream 5000 false chr3: 16724680-16729679 Medicago truncatula
Medtr3g449340 10.0kb upstream 10.0kb upstream 11616 true chr3: 16713064-16724679 Medicago truncatula
Medtr3g449340 10.0kb upstream 10.0kb upstream 10000 false chr3: 16713064-16723063 Medicago truncatula
Medtr3g449340 10.0kb downstream 10.0kb downstream 11616 true chr3: 16723064-16734679 Medicago truncatula
Medtr3g449340 10.0kb downstream 10.0kb downstream 10000 false chr3: 16724680-16734679 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122259349 5265 Fabidae Singleton cluster - no MSA
124000796 5270 Rosid Singleton cluster - no MSA
123748809 5271 Pentapetalae View MSA
122786225 5272 Eudicot View MSA
122042554 5273 Angiosperm View MSA
121347255 5274 Embryophyte View MSA
123428302 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.471        
cufflinks 1.31        
cufflinks 1.148        
cufflinks 1.367        
cufflinks 1.017       Low
cufflinks 2.702       High
cufflinks 1.983        
cufflinks 1.015       Low
cufflinks 1.959        

0 Strain