Gene : Medtr3g448620 M. truncatula Mt4.0v1
Defline:  (1 of 34) PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) Description:  pentatricopeptide (PPR) repeat protein
Genomic Order:  1765 Name:  ? Medtr3g448620
Secondary Identifier:  ? PAC:31056734
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g448620 0.5kb upstream 0.5kb upstream 2346 true chr3: 16349169-16351514 Medicago truncatula
Medtr3g448620 0.5kb upstream 0.5kb upstream 500 false chr3: 16349169-16349668 Medicago truncatula
Medtr3g448620 0.5kb downstream 0.5kb downstream 2346 true chr3: 16349669-16352014 Medicago truncatula
Medtr3g448620 0.5kb downstream 0.5kb downstream 500 false chr3: 16351515-16352014 Medicago truncatula
Medtr3g448620 1.0kb upstream 1.0kb upstream 2846 true chr3: 16348669-16351514 Medicago truncatula
Medtr3g448620 1.0kb upstream 1.0kb upstream 1000 false chr3: 16348669-16349668 Medicago truncatula
Medtr3g448620 1.0kb downstream 1.0kb downstream 2846 true chr3: 16349669-16352514 Medicago truncatula
Medtr3g448620 1.0kb downstream 1.0kb downstream 1000 false chr3: 16351515-16352514 Medicago truncatula
Medtr3g448620 2.0kb upstream 2.0kb upstream 3846 true chr3: 16347669-16351514 Medicago truncatula
Medtr3g448620 2.0kb upstream 2.0kb upstream 2000 false chr3: 16347669-16349668 Medicago truncatula
Medtr3g448620 2.0kb downstream 2.0kb downstream 3846 true chr3: 16349669-16353514 Medicago truncatula
Medtr3g448620 2.0kb downstream 2.0kb downstream 2000 false chr3: 16351515-16353514 Medicago truncatula
Medtr3g448620 5.0kb upstream 5.0kb upstream 6846 true chr3: 16344669-16351514 Medicago truncatula
Medtr3g448620 5.0kb upstream 5.0kb upstream 5000 false chr3: 16344669-16349668 Medicago truncatula
Medtr3g448620 5.0kb downstream 5.0kb downstream 6846 true chr3: 16349669-16356514 Medicago truncatula
Medtr3g448620 5.0kb downstream 5.0kb downstream 5000 false chr3: 16351515-16356514 Medicago truncatula
Medtr3g448620 10.0kb upstream 10.0kb upstream 11846 true chr3: 16339669-16351514 Medicago truncatula
Medtr3g448620 10.0kb upstream 10.0kb upstream 10000 false chr3: 16339669-16349668 Medicago truncatula
Medtr3g448620 10.0kb downstream 10.0kb downstream 11846 true chr3: 16349669-16361514 Medicago truncatula
Medtr3g448620 10.0kb downstream 10.0kb downstream 10000 false chr3: 16351515-16361514 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.057        
cufflinks 0.869        
cufflinks 1.009        
cufflinks 0.116       Low
cufflinks 1.32        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.282        
cufflinks 0.823        
cufflinks 0.207       Low

0 Strain