Gene : Medtr3g113170 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR10742:SF284 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A Description:  polyamine oxidase
Genomic Order:  6403 Name:  ? Medtr3g113170
Secondary Identifier:  ? PAC:31055402
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6441 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g113170 0.5kb upstream 0.5kb upstream 9917 true chr3: 52876194-52886110 Medicago truncatula
Medtr3g113170 0.5kb upstream 0.5kb upstream 500 false chr3: 52885611-52886110 Medicago truncatula
Medtr3g113170 0.5kb downstream 0.5kb downstream 9917 true chr3: 52875694-52885610 Medicago truncatula
Medtr3g113170 0.5kb downstream 0.5kb downstream 500 false chr3: 52875694-52876193 Medicago truncatula
Medtr3g113170 1.0kb upstream 1.0kb upstream 10417 true chr3: 52876194-52886610 Medicago truncatula
Medtr3g113170 1.0kb upstream 1.0kb upstream 1000 false chr3: 52885611-52886610 Medicago truncatula
Medtr3g113170 1.0kb downstream 1.0kb downstream 10417 true chr3: 52875194-52885610 Medicago truncatula
Medtr3g113170 1.0kb downstream 1.0kb downstream 1000 false chr3: 52875194-52876193 Medicago truncatula
Medtr3g113170 2.0kb upstream 2.0kb upstream 11417 true chr3: 52876194-52887610 Medicago truncatula
Medtr3g113170 2.0kb upstream 2.0kb upstream 2000 false chr3: 52885611-52887610 Medicago truncatula
Medtr3g113170 2.0kb downstream 2.0kb downstream 11417 true chr3: 52874194-52885610 Medicago truncatula
Medtr3g113170 2.0kb downstream 2.0kb downstream 2000 false chr3: 52874194-52876193 Medicago truncatula
Medtr3g113170 5.0kb upstream 5.0kb upstream 14417 true chr3: 52876194-52890610 Medicago truncatula
Medtr3g113170 5.0kb upstream 5.0kb upstream 5000 false chr3: 52885611-52890610 Medicago truncatula
Medtr3g113170 5.0kb downstream 5.0kb downstream 14417 true chr3: 52871194-52885610 Medicago truncatula
Medtr3g113170 5.0kb downstream 5.0kb downstream 5000 false chr3: 52871194-52876193 Medicago truncatula
Medtr3g113170 10.0kb upstream 10.0kb upstream 19417 true chr3: 52876194-52895610 Medicago truncatula
Medtr3g113170 10.0kb upstream 10.0kb upstream 10000 false chr3: 52885611-52895610 Medicago truncatula
Medtr3g113170 10.0kb downstream 10.0kb downstream 19417 true chr3: 52866194-52885610 Medicago truncatula
Medtr3g113170 10.0kb downstream 10.0kb downstream 10000 false chr3: 52866194-52876193 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312967 5265 Fabidae View MSA
124062670 5270 Rosid View MSA
123738203 5271 Pentapetalae View MSA
122790962 5272 Eudicot View MSA
122046463 5273 Angiosperm View MSA
121349079 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.876        
cufflinks 1.285        
cufflinks 1.27        
cufflinks 0.189       Low
cufflinks 1.731       High
cufflinks 0.203       Low
cufflinks 0.639        
cufflinks 1.074        
cufflinks 0.583        

0 Strain