Gene : Medtr3g114570 M. truncatula Mt4.0v1
Defline:  (1 of 6) 6.1.1.15 - Proline--tRNA ligase / Prolyl-tRNA synthetase Description:  prolyl-tRNA synthetase family protein
Genomic Order:  6488 Name:  ? Medtr3g114570
Secondary Identifier:  ? PAC:31054616
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g114570 0.5kb upstream 0.5kb upstream 3783 true chr3: 53497895-53501677 Medicago truncatula
Medtr3g114570 0.5kb upstream 0.5kb upstream 500 false chr3: 53501178-53501677 Medicago truncatula
Medtr3g114570 0.5kb downstream 0.5kb downstream 3783 true chr3: 53497395-53501177 Medicago truncatula
Medtr3g114570 0.5kb downstream 0.5kb downstream 500 false chr3: 53497395-53497894 Medicago truncatula
Medtr3g114570 1.0kb upstream 1.0kb upstream 4283 true chr3: 53497895-53502177 Medicago truncatula
Medtr3g114570 1.0kb upstream 1.0kb upstream 1000 false chr3: 53501178-53502177 Medicago truncatula
Medtr3g114570 1.0kb downstream 1.0kb downstream 4283 true chr3: 53496895-53501177 Medicago truncatula
Medtr3g114570 1.0kb downstream 1.0kb downstream 1000 false chr3: 53496895-53497894 Medicago truncatula
Medtr3g114570 2.0kb upstream 2.0kb upstream 5283 true chr3: 53497895-53503177 Medicago truncatula
Medtr3g114570 2.0kb upstream 2.0kb upstream 2000 false chr3: 53501178-53503177 Medicago truncatula
Medtr3g114570 2.0kb downstream 2.0kb downstream 5283 true chr3: 53495895-53501177 Medicago truncatula
Medtr3g114570 2.0kb downstream 2.0kb downstream 2000 false chr3: 53495895-53497894 Medicago truncatula
Medtr3g114570 5.0kb upstream 5.0kb upstream 8283 true chr3: 53497895-53506177 Medicago truncatula
Medtr3g114570 5.0kb upstream 5.0kb upstream 5000 false chr3: 53501178-53506177 Medicago truncatula
Medtr3g114570 5.0kb downstream 5.0kb downstream 8283 true chr3: 53492895-53501177 Medicago truncatula
Medtr3g114570 5.0kb downstream 5.0kb downstream 5000 false chr3: 53492895-53497894 Medicago truncatula
Medtr3g114570 10.0kb upstream 10.0kb upstream 13283 true chr3: 53497895-53511177 Medicago truncatula
Medtr3g114570 10.0kb upstream 10.0kb upstream 10000 false chr3: 53501178-53511177 Medicago truncatula
Medtr3g114570 10.0kb downstream 10.0kb downstream 13283 true chr3: 53487895-53501177 Medicago truncatula
Medtr3g114570 10.0kb downstream 10.0kb downstream 10000 false chr3: 53487895-53497894 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296108 5265 Fabidae View MSA
124041821 5270 Rosid View MSA
123755028 5271 Pentapetalae View MSA
122798313 5272 Eudicot View MSA
122044069 5273 Angiosperm View MSA
121345199 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.025     Low  
cufflinks 0.021     Low  
cufflinks 0.037     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.05     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.043     Low  
cufflinks 0.024     Low  
cufflinks 0.011     Low Low

0 Strain