Gene : Medtr3g114540 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11079:SF73 - RNA PSEUDOURIDINE SYNTHASE 2, CHLOROPLASTIC Description:  RNA pseudouridine synthase, putative
Genomic Order:  6486 Name:  ? Medtr3g114540
Secondary Identifier:  ? PAC:31054222
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g114540 0.5kb upstream 0.5kb upstream 5552 true chr3: 53481622-53487173 Medicago truncatula
Medtr3g114540 0.5kb upstream 0.5kb upstream 500 false chr3: 53481622-53482121 Medicago truncatula
Medtr3g114540 0.5kb downstream 0.5kb downstream 5552 true chr3: 53482122-53487673 Medicago truncatula
Medtr3g114540 0.5kb downstream 0.5kb downstream 500 false chr3: 53487174-53487673 Medicago truncatula
Medtr3g114540 1.0kb upstream 1.0kb upstream 6052 true chr3: 53481122-53487173 Medicago truncatula
Medtr3g114540 1.0kb upstream 1.0kb upstream 1000 false chr3: 53481122-53482121 Medicago truncatula
Medtr3g114540 1.0kb downstream 1.0kb downstream 6052 true chr3: 53482122-53488173 Medicago truncatula
Medtr3g114540 1.0kb downstream 1.0kb downstream 1000 false chr3: 53487174-53488173 Medicago truncatula
Medtr3g114540 2.0kb upstream 2.0kb upstream 7052 true chr3: 53480122-53487173 Medicago truncatula
Medtr3g114540 2.0kb upstream 2.0kb upstream 2000 false chr3: 53480122-53482121 Medicago truncatula
Medtr3g114540 2.0kb downstream 2.0kb downstream 7052 true chr3: 53482122-53489173 Medicago truncatula
Medtr3g114540 2.0kb downstream 2.0kb downstream 2000 false chr3: 53487174-53489173 Medicago truncatula
Medtr3g114540 5.0kb upstream 5.0kb upstream 10052 true chr3: 53477122-53487173 Medicago truncatula
Medtr3g114540 5.0kb upstream 5.0kb upstream 5000 false chr3: 53477122-53482121 Medicago truncatula
Medtr3g114540 5.0kb downstream 5.0kb downstream 10052 true chr3: 53482122-53492173 Medicago truncatula
Medtr3g114540 5.0kb downstream 5.0kb downstream 5000 false chr3: 53487174-53492173 Medicago truncatula
Medtr3g114540 10.0kb upstream 10.0kb upstream 15052 true chr3: 53472122-53487173 Medicago truncatula
Medtr3g114540 10.0kb upstream 10.0kb upstream 10000 false chr3: 53472122-53482121 Medicago truncatula
Medtr3g114540 10.0kb downstream 10.0kb downstream 15052 true chr3: 53482122-53497173 Medicago truncatula
Medtr3g114540 10.0kb downstream 10.0kb downstream 10000 false chr3: 53487174-53497173 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297491 5265 Fabidae View MSA
124067698 5270 Rosid View MSA
123740494 5271 Pentapetalae View MSA
122788913 5272 Eudicot View MSA
122047561 5273 Angiosperm View MSA
121344474 5274 Embryophyte View MSA
123426669 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.025     Low Low
cufflinks 0.358        
cufflinks 0.231        
cufflinks 0.026     Low Low
cufflinks 0.567       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.058     Low  
cufflinks 0.247        
cufflinks 0.085     Low  

0 Strain