Gene : Medtr3g115400 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR32002:SF6 - PROTEIN NLP4-RELATED Description:  plant regulator RWP-RK family protein
Genomic Order:  6541 Name:  ? Medtr3g115400
Secondary Identifier:  ? PAC:31054401
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g115400 0.5kb upstream 0.5kb upstream 6003 true chr3: 53963503-53969505 Medicago truncatula
Medtr3g115400 0.5kb upstream 0.5kb upstream 500 false chr3: 53963503-53964002 Medicago truncatula
Medtr3g115400 0.5kb downstream 0.5kb downstream 6003 true chr3: 53964003-53970005 Medicago truncatula
Medtr3g115400 0.5kb downstream 0.5kb downstream 500 false chr3: 53969506-53970005 Medicago truncatula
Medtr3g115400 1.0kb upstream 1.0kb upstream 6503 true chr3: 53963003-53969505 Medicago truncatula
Medtr3g115400 1.0kb upstream 1.0kb upstream 1000 false chr3: 53963003-53964002 Medicago truncatula
Medtr3g115400 1.0kb downstream 1.0kb downstream 6503 true chr3: 53964003-53970505 Medicago truncatula
Medtr3g115400 1.0kb downstream 1.0kb downstream 1000 false chr3: 53969506-53970505 Medicago truncatula
Medtr3g115400 2.0kb upstream 2.0kb upstream 7503 true chr3: 53962003-53969505 Medicago truncatula
Medtr3g115400 2.0kb upstream 2.0kb upstream 2000 false chr3: 53962003-53964002 Medicago truncatula
Medtr3g115400 2.0kb downstream 2.0kb downstream 7503 true chr3: 53964003-53971505 Medicago truncatula
Medtr3g115400 2.0kb downstream 2.0kb downstream 2000 false chr3: 53969506-53971505 Medicago truncatula
Medtr3g115400 5.0kb upstream 5.0kb upstream 10503 true chr3: 53959003-53969505 Medicago truncatula
Medtr3g115400 5.0kb upstream 5.0kb upstream 5000 false chr3: 53959003-53964002 Medicago truncatula
Medtr3g115400 5.0kb downstream 5.0kb downstream 10503 true chr3: 53964003-53974505 Medicago truncatula
Medtr3g115400 5.0kb downstream 5.0kb downstream 5000 false chr3: 53969506-53974505 Medicago truncatula
Medtr3g115400 10.0kb upstream 10.0kb upstream 15503 true chr3: 53954003-53969505 Medicago truncatula
Medtr3g115400 10.0kb upstream 10.0kb upstream 10000 false chr3: 53954003-53964002 Medicago truncatula
Medtr3g115400 10.0kb downstream 10.0kb downstream 15503 true chr3: 53964003-53979505 Medicago truncatula
Medtr3g115400 10.0kb downstream 10.0kb downstream 10000 false chr3: 53969506-53979505 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301251 5265 Fabidae View MSA
124068649 5270 Rosid View MSA
123748855 5271 Pentapetalae View MSA
122793045 5272 Eudicot View MSA
122051349 5273 Angiosperm View MSA
121350940 5274 Embryophyte View MSA
123428170 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.124        
cufflinks 3.078        
cufflinks 5.296        
cufflinks 2.996        
cufflinks 6.408       High
cufflinks 0.69       Low
cufflinks 3.483        
cufflinks 3.894        
cufflinks 3.526        

0 Strain