Gene : Medtr3g115250 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR12858:SF1 - PRE-RRNA-PROCESSING PROTEIN TSR1 HOMOLOG Description:  pre-rRNA-processing TSR1-like protein
Genomic Order:  6530 Name:  ? Medtr3g115250
Secondary Identifier:  ? PAC:31061316
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g115250 0.5kb upstream 0.5kb upstream 8679 true chr3: 53884473-53893151 Medicago truncatula
Medtr3g115250 0.5kb upstream 0.5kb upstream 500 false chr3: 53892652-53893151 Medicago truncatula
Medtr3g115250 0.5kb downstream 0.5kb downstream 8679 true chr3: 53883973-53892651 Medicago truncatula
Medtr3g115250 0.5kb downstream 0.5kb downstream 500 false chr3: 53883973-53884472 Medicago truncatula
Medtr3g115250 1.0kb upstream 1.0kb upstream 9179 true chr3: 53884473-53893651 Medicago truncatula
Medtr3g115250 1.0kb upstream 1.0kb upstream 1000 false chr3: 53892652-53893651 Medicago truncatula
Medtr3g115250 1.0kb downstream 1.0kb downstream 9179 true chr3: 53883473-53892651 Medicago truncatula
Medtr3g115250 1.0kb downstream 1.0kb downstream 1000 false chr3: 53883473-53884472 Medicago truncatula
Medtr3g115250 2.0kb upstream 2.0kb upstream 10179 true chr3: 53884473-53894651 Medicago truncatula
Medtr3g115250 2.0kb upstream 2.0kb upstream 2000 false chr3: 53892652-53894651 Medicago truncatula
Medtr3g115250 2.0kb downstream 2.0kb downstream 10179 true chr3: 53882473-53892651 Medicago truncatula
Medtr3g115250 2.0kb downstream 2.0kb downstream 2000 false chr3: 53882473-53884472 Medicago truncatula
Medtr3g115250 5.0kb upstream 5.0kb upstream 13179 true chr3: 53884473-53897651 Medicago truncatula
Medtr3g115250 5.0kb upstream 5.0kb upstream 5000 false chr3: 53892652-53897651 Medicago truncatula
Medtr3g115250 5.0kb downstream 5.0kb downstream 13179 true chr3: 53879473-53892651 Medicago truncatula
Medtr3g115250 5.0kb downstream 5.0kb downstream 5000 false chr3: 53879473-53884472 Medicago truncatula
Medtr3g115250 10.0kb upstream 10.0kb upstream 18179 true chr3: 53884473-53902651 Medicago truncatula
Medtr3g115250 10.0kb upstream 10.0kb upstream 10000 false chr3: 53892652-53902651 Medicago truncatula
Medtr3g115250 10.0kb downstream 10.0kb downstream 18179 true chr3: 53874473-53892651 Medicago truncatula
Medtr3g115250 10.0kb downstream 10.0kb downstream 10000 false chr3: 53874473-53884472 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299777 5265 Fabidae View MSA
124066682 5270 Rosid View MSA
123739487 5271 Pentapetalae View MSA
122792975 5272 Eudicot View MSA
122044889 5273 Angiosperm View MSA
121347720 5274 Embryophyte View MSA
123428215 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.252        
cufflinks 4.254        
cufflinks 6.465        
cufflinks 1.501       Low
cufflinks 10.967     High High
cufflinks 0.854       Low
cufflinks 3.434        
cufflinks 6.232        
cufflinks 2.349        

0 Strain