Gene : Medtr3g117620 M. truncatula Mt4.0v1
Defline:  (1 of 43) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Description:  PPR containing plant-like protein
Genomic Order:  6687 Name:  ? Medtr3g117620
Secondary Identifier:  ? PAC:31059888
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g117620 0.5kb upstream 0.5kb upstream 2656 true chr3: 55078984-55081639 Medicago truncatula
Medtr3g117620 0.5kb upstream 0.5kb upstream 500 false chr3: 55081140-55081639 Medicago truncatula
Medtr3g117620 0.5kb downstream 0.5kb downstream 2656 true chr3: 55078484-55081139 Medicago truncatula
Medtr3g117620 0.5kb downstream 0.5kb downstream 500 false chr3: 55078484-55078983 Medicago truncatula
Medtr3g117620 1.0kb upstream 1.0kb upstream 3156 true chr3: 55078984-55082139 Medicago truncatula
Medtr3g117620 1.0kb upstream 1.0kb upstream 1000 false chr3: 55081140-55082139 Medicago truncatula
Medtr3g117620 1.0kb downstream 1.0kb downstream 3156 true chr3: 55077984-55081139 Medicago truncatula
Medtr3g117620 1.0kb downstream 1.0kb downstream 1000 false chr3: 55077984-55078983 Medicago truncatula
Medtr3g117620 2.0kb upstream 2.0kb upstream 4156 true chr3: 55078984-55083139 Medicago truncatula
Medtr3g117620 2.0kb upstream 2.0kb upstream 2000 false chr3: 55081140-55083139 Medicago truncatula
Medtr3g117620 2.0kb downstream 2.0kb downstream 4156 true chr3: 55076984-55081139 Medicago truncatula
Medtr3g117620 2.0kb downstream 2.0kb downstream 2000 false chr3: 55076984-55078983 Medicago truncatula
Medtr3g117620 5.0kb upstream 5.0kb upstream 7156 true chr3: 55078984-55086139 Medicago truncatula
Medtr3g117620 5.0kb upstream 5.0kb upstream 5000 false chr3: 55081140-55086139 Medicago truncatula
Medtr3g117620 5.0kb downstream 5.0kb downstream 7156 true chr3: 55073984-55081139 Medicago truncatula
Medtr3g117620 5.0kb downstream 5.0kb downstream 5000 false chr3: 55073984-55078983 Medicago truncatula
Medtr3g117620 10.0kb upstream 10.0kb upstream 12156 true chr3: 55078984-55091139 Medicago truncatula
Medtr3g117620 10.0kb upstream 10.0kb upstream 10000 false chr3: 55081140-55091139 Medicago truncatula
Medtr3g117620 10.0kb downstream 10.0kb downstream 12156 true chr3: 55068984-55081139 Medicago truncatula
Medtr3g117620 10.0kb downstream 10.0kb downstream 10000 false chr3: 55068984-55078983 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314444 5265 Fabidae View MSA
124074689 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.778       High
cufflinks 0.266        
cufflinks 0.426        
cufflinks 0.197       Low
cufflinks 1.017       High
cufflinks 0.204       Low
cufflinks 0.624        
cufflinks 0.338        
cufflinks 0.46        

0 Strain