Gene : Medtr3g117580 M. truncatula Mt4.0v1
Defline:  (1 of 1) 1.3.1.89 - tRNA-dihydrouridine(47) synthase (NAD(P)(+)) / tRNA-dihydrouridine synthase 3 Description:  tRNA-dihydrouridine synthase
Genomic Order:  6683 Name:  ? Medtr3g117580
Secondary Identifier:  ? PAC:31060008
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g117580 0.5kb upstream 0.5kb upstream 5477 true chr3: 55052367-55057843 Medicago truncatula
Medtr3g117580 0.5kb upstream 0.5kb upstream 500 false chr3: 55052367-55052866 Medicago truncatula
Medtr3g117580 0.5kb downstream 0.5kb downstream 5477 true chr3: 55052867-55058343 Medicago truncatula
Medtr3g117580 0.5kb downstream 0.5kb downstream 500 false chr3: 55057844-55058343 Medicago truncatula
Medtr3g117580 1.0kb upstream 1.0kb upstream 5977 true chr3: 55051867-55057843 Medicago truncatula
Medtr3g117580 1.0kb upstream 1.0kb upstream 1000 false chr3: 55051867-55052866 Medicago truncatula
Medtr3g117580 1.0kb downstream 1.0kb downstream 5977 true chr3: 55052867-55058843 Medicago truncatula
Medtr3g117580 1.0kb downstream 1.0kb downstream 1000 false chr3: 55057844-55058843 Medicago truncatula
Medtr3g117580 2.0kb upstream 2.0kb upstream 6977 true chr3: 55050867-55057843 Medicago truncatula
Medtr3g117580 2.0kb upstream 2.0kb upstream 2000 false chr3: 55050867-55052866 Medicago truncatula
Medtr3g117580 2.0kb downstream 2.0kb downstream 6977 true chr3: 55052867-55059843 Medicago truncatula
Medtr3g117580 2.0kb downstream 2.0kb downstream 2000 false chr3: 55057844-55059843 Medicago truncatula
Medtr3g117580 5.0kb upstream 5.0kb upstream 9977 true chr3: 55047867-55057843 Medicago truncatula
Medtr3g117580 5.0kb upstream 5.0kb upstream 5000 false chr3: 55047867-55052866 Medicago truncatula
Medtr3g117580 5.0kb downstream 5.0kb downstream 9977 true chr3: 55052867-55062843 Medicago truncatula
Medtr3g117580 5.0kb downstream 5.0kb downstream 5000 false chr3: 55057844-55062843 Medicago truncatula
Medtr3g117580 10.0kb upstream 10.0kb upstream 14977 true chr3: 55042867-55057843 Medicago truncatula
Medtr3g117580 10.0kb upstream 10.0kb upstream 10000 false chr3: 55042867-55052866 Medicago truncatula
Medtr3g117580 10.0kb downstream 10.0kb downstream 14977 true chr3: 55052867-55067843 Medicago truncatula
Medtr3g117580 10.0kb downstream 10.0kb downstream 10000 false chr3: 55057844-55067843 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301677 5265 Fabidae View MSA
124062721 5270 Rosid View MSA
123739972 5271 Pentapetalae View MSA
122787852 5272 Eudicot View MSA
122047874 5273 Angiosperm View MSA
121343819 5274 Embryophyte View MSA
123428585 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.123        
cufflinks 5.769        
cufflinks 9.572        
cufflinks 1.802        
cufflinks 10.846     High  
cufflinks 0.226       Low
cufflinks 3.995        
cufflinks 7.551        
cufflinks 3.791        

0 Strain