Gene : Medtr3g108808 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR22937//PTHR22937:SF53 - RING FINGER CONTAINING PROTEIN Description:  zinc finger (C3HC4-type RING finger) family protein
Genomic Order:  6055 Name:  ? Medtr3g108808
Secondary Identifier:  ? PAC:31059609
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g108808 0.5kb upstream 0.5kb upstream 5035 true chr3: 50288412-50293446 Medicago truncatula
Medtr3g108808 0.5kb upstream 0.5kb upstream 500 false chr3: 50292947-50293446 Medicago truncatula
Medtr3g108808 0.5kb downstream 0.5kb downstream 5035 true chr3: 50287912-50292946 Medicago truncatula
Medtr3g108808 0.5kb downstream 0.5kb downstream 500 false chr3: 50287912-50288411 Medicago truncatula
Medtr3g108808 1.0kb upstream 1.0kb upstream 5535 true chr3: 50288412-50293946 Medicago truncatula
Medtr3g108808 1.0kb upstream 1.0kb upstream 1000 false chr3: 50292947-50293946 Medicago truncatula
Medtr3g108808 1.0kb downstream 1.0kb downstream 5535 true chr3: 50287412-50292946 Medicago truncatula
Medtr3g108808 1.0kb downstream 1.0kb downstream 1000 false chr3: 50287412-50288411 Medicago truncatula
Medtr3g108808 2.0kb upstream 2.0kb upstream 6535 true chr3: 50288412-50294946 Medicago truncatula
Medtr3g108808 2.0kb upstream 2.0kb upstream 2000 false chr3: 50292947-50294946 Medicago truncatula
Medtr3g108808 2.0kb downstream 2.0kb downstream 6535 true chr3: 50286412-50292946 Medicago truncatula
Medtr3g108808 2.0kb downstream 2.0kb downstream 2000 false chr3: 50286412-50288411 Medicago truncatula
Medtr3g108808 5.0kb upstream 5.0kb upstream 9535 true chr3: 50288412-50297946 Medicago truncatula
Medtr3g108808 5.0kb upstream 5.0kb upstream 5000 false chr3: 50292947-50297946 Medicago truncatula
Medtr3g108808 5.0kb downstream 5.0kb downstream 9535 true chr3: 50283412-50292946 Medicago truncatula
Medtr3g108808 5.0kb downstream 5.0kb downstream 5000 false chr3: 50283412-50288411 Medicago truncatula
Medtr3g108808 10.0kb upstream 10.0kb upstream 14535 true chr3: 50288412-50302946 Medicago truncatula
Medtr3g108808 10.0kb upstream 10.0kb upstream 10000 false chr3: 50292947-50302946 Medicago truncatula
Medtr3g108808 10.0kb downstream 10.0kb downstream 14535 true chr3: 50278412-50292946 Medicago truncatula
Medtr3g108808 10.0kb downstream 10.0kb downstream 10000 false chr3: 50278412-50288411 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310011 5265 Fabidae View MSA
124062589 5270 Rosid View MSA
123746879 5271 Pentapetalae View MSA
122795364 5272 Eudicot View MSA
122045356 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351500 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.3        
cufflinks 5.556        
cufflinks 5.747        
cufflinks 12.243     High High
cufflinks 3.402       Low
cufflinks 7.713        
cufflinks 11.59     High High
cufflinks 5.267        
cufflinks 11.497     High High

0 Strain