Gene : Medtr3g109610 M. truncatula Mt4.0v1
Defline:  (1 of 2) 1.13.11.70 - All-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase / Carotenoid cleavage dioxygenase 8 Description:  carotenoid cleavage dioxygenase
Genomic Order:  6197 Name:  ? Medtr3g109610
Secondary Identifier:  ? PAC:31054951
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7101 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g109610 0.5kb upstream 0.5kb upstream 3939 true chr3: 51267979-51271917 Medicago truncatula
Medtr3g109610 0.5kb upstream 0.5kb upstream 500 false chr3: 51267979-51268478 Medicago truncatula
Medtr3g109610 0.5kb downstream 0.5kb downstream 3939 true chr3: 51268479-51272417 Medicago truncatula
Medtr3g109610 0.5kb downstream 0.5kb downstream 500 false chr3: 51271918-51272417 Medicago truncatula
Medtr3g109610 1.0kb upstream 1.0kb upstream 4439 true chr3: 51267479-51271917 Medicago truncatula
Medtr3g109610 1.0kb upstream 1.0kb upstream 1000 false chr3: 51267479-51268478 Medicago truncatula
Medtr3g109610 1.0kb downstream 1.0kb downstream 4439 true chr3: 51268479-51272917 Medicago truncatula
Medtr3g109610 1.0kb downstream 1.0kb downstream 1000 false chr3: 51271918-51272917 Medicago truncatula
Medtr3g109610 2.0kb upstream 2.0kb upstream 5439 true chr3: 51266479-51271917 Medicago truncatula
Medtr3g109610 2.0kb upstream 2.0kb upstream 2000 false chr3: 51266479-51268478 Medicago truncatula
Medtr3g109610 2.0kb downstream 2.0kb downstream 5439 true chr3: 51268479-51273917 Medicago truncatula
Medtr3g109610 2.0kb downstream 2.0kb downstream 2000 false chr3: 51271918-51273917 Medicago truncatula
Medtr3g109610 5.0kb upstream 5.0kb upstream 8439 true chr3: 51263479-51271917 Medicago truncatula
Medtr3g109610 5.0kb upstream 5.0kb upstream 5000 false chr3: 51263479-51268478 Medicago truncatula
Medtr3g109610 5.0kb downstream 5.0kb downstream 8439 true chr3: 51268479-51276917 Medicago truncatula
Medtr3g109610 5.0kb downstream 5.0kb downstream 5000 false chr3: 51271918-51276917 Medicago truncatula
Medtr3g109610 10.0kb upstream 10.0kb upstream 13439 true chr3: 51258479-51271917 Medicago truncatula
Medtr3g109610 10.0kb upstream 10.0kb upstream 10000 false chr3: 51258479-51268478 Medicago truncatula
Medtr3g109610 10.0kb downstream 10.0kb downstream 13439 true chr3: 51268479-51281917 Medicago truncatula
Medtr3g109610 10.0kb downstream 10.0kb downstream 10000 false chr3: 51271918-51281917 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305580 5265 Fabidae View MSA
124065320 5270 Rosid View MSA
123738795 5271 Pentapetalae View MSA
122791259 5272 Eudicot View MSA
122048984 5273 Angiosperm View MSA
123428919 5275 Viridiplantae View MSA
121344649 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.05     Low  
cufflinks 0.004     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.174        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.129        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.38        

0 Strain