Gene : Medtr3g109620 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR12532:SF0 - TRANSCRIPTIONAL REGULATORY PROTEIN HAH1-RELATED Description:  transcriptional regulatory plant protein, putative
Genomic Order:  6198 Name:  ? Medtr3g109620
Secondary Identifier:  ? PAC:31061246
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g109620 0.5kb upstream 0.5kb upstream 7741 true chr3: 51271955-51279695 Medicago truncatula
Medtr3g109620 0.5kb upstream 0.5kb upstream 500 false chr3: 51279196-51279695 Medicago truncatula
Medtr3g109620 0.5kb downstream 0.5kb downstream 7741 true chr3: 51271455-51279195 Medicago truncatula
Medtr3g109620 0.5kb downstream 0.5kb downstream 500 false chr3: 51271455-51271954 Medicago truncatula
Medtr3g109620 1.0kb upstream 1.0kb upstream 8241 true chr3: 51271955-51280195 Medicago truncatula
Medtr3g109620 1.0kb upstream 1.0kb upstream 1000 false chr3: 51279196-51280195 Medicago truncatula
Medtr3g109620 1.0kb downstream 1.0kb downstream 8241 true chr3: 51270955-51279195 Medicago truncatula
Medtr3g109620 1.0kb downstream 1.0kb downstream 1000 false chr3: 51270955-51271954 Medicago truncatula
Medtr3g109620 2.0kb upstream 2.0kb upstream 9241 true chr3: 51271955-51281195 Medicago truncatula
Medtr3g109620 2.0kb upstream 2.0kb upstream 2000 false chr3: 51279196-51281195 Medicago truncatula
Medtr3g109620 2.0kb downstream 2.0kb downstream 9241 true chr3: 51269955-51279195 Medicago truncatula
Medtr3g109620 2.0kb downstream 2.0kb downstream 2000 false chr3: 51269955-51271954 Medicago truncatula
Medtr3g109620 5.0kb upstream 5.0kb upstream 12241 true chr3: 51271955-51284195 Medicago truncatula
Medtr3g109620 5.0kb upstream 5.0kb upstream 5000 false chr3: 51279196-51284195 Medicago truncatula
Medtr3g109620 5.0kb downstream 5.0kb downstream 12241 true chr3: 51266955-51279195 Medicago truncatula
Medtr3g109620 5.0kb downstream 5.0kb downstream 5000 false chr3: 51266955-51271954 Medicago truncatula
Medtr3g109620 10.0kb upstream 10.0kb upstream 17241 true chr3: 51271955-51289195 Medicago truncatula
Medtr3g109620 10.0kb upstream 10.0kb upstream 10000 false chr3: 51279196-51289195 Medicago truncatula
Medtr3g109620 10.0kb downstream 10.0kb downstream 17241 true chr3: 51261955-51279195 Medicago truncatula
Medtr3g109620 10.0kb downstream 10.0kb downstream 10000 false chr3: 51261955-51271954 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308716 5265 Fabidae View MSA
124060394 5270 Rosid View MSA
123737611 5271 Pentapetalae View MSA
122791742 5272 Eudicot View MSA
122042716 5273 Angiosperm View MSA
121345418 5274 Embryophyte View MSA
123424346 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.152        
cufflinks 0.305        
cufflinks 0.274        
cufflinks 0.066     Low Low
cufflinks 0.481       High
cufflinks 0.071     Low Low
cufflinks 0.13        
cufflinks 0.309        
cufflinks 0.106        

0 Strain