Gene : Medtr3g110320 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR11177:SF219 - CHITINASE-LIKE PROTEIN-RELATED Description:  glycoside hydrolase family 18 protein
Genomic Order:  6229 Name:  ? Medtr3g110320
Secondary Identifier:  ? PAC:31054123
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g110320 0.5kb upstream 0.5kb upstream 4767 true chr3: 51479067-51483833 Medicago truncatula
Medtr3g110320 0.5kb upstream 0.5kb upstream 500 false chr3: 51483334-51483833 Medicago truncatula
Medtr3g110320 0.5kb downstream 0.5kb downstream 4767 true chr3: 51478567-51483333 Medicago truncatula
Medtr3g110320 0.5kb downstream 0.5kb downstream 500 false chr3: 51478567-51479066 Medicago truncatula
Medtr3g110320 1.0kb upstream 1.0kb upstream 5267 true chr3: 51479067-51484333 Medicago truncatula
Medtr3g110320 1.0kb upstream 1.0kb upstream 1000 false chr3: 51483334-51484333 Medicago truncatula
Medtr3g110320 1.0kb downstream 1.0kb downstream 5267 true chr3: 51478067-51483333 Medicago truncatula
Medtr3g110320 1.0kb downstream 1.0kb downstream 1000 false chr3: 51478067-51479066 Medicago truncatula
Medtr3g110320 2.0kb upstream 2.0kb upstream 6267 true chr3: 51479067-51485333 Medicago truncatula
Medtr3g110320 2.0kb upstream 2.0kb upstream 2000 false chr3: 51483334-51485333 Medicago truncatula
Medtr3g110320 2.0kb downstream 2.0kb downstream 6267 true chr3: 51477067-51483333 Medicago truncatula
Medtr3g110320 2.0kb downstream 2.0kb downstream 2000 false chr3: 51477067-51479066 Medicago truncatula
Medtr3g110320 5.0kb upstream 5.0kb upstream 9267 true chr3: 51479067-51488333 Medicago truncatula
Medtr3g110320 5.0kb upstream 5.0kb upstream 5000 false chr3: 51483334-51488333 Medicago truncatula
Medtr3g110320 5.0kb downstream 5.0kb downstream 9267 true chr3: 51474067-51483333 Medicago truncatula
Medtr3g110320 5.0kb downstream 5.0kb downstream 5000 false chr3: 51474067-51479066 Medicago truncatula
Medtr3g110320 10.0kb upstream 10.0kb upstream 14267 true chr3: 51479067-51493333 Medicago truncatula
Medtr3g110320 10.0kb upstream 10.0kb upstream 10000 false chr3: 51483334-51493333 Medicago truncatula
Medtr3g110320 10.0kb downstream 10.0kb downstream 14267 true chr3: 51469067-51483333 Medicago truncatula
Medtr3g110320 10.0kb downstream 10.0kb downstream 10000 false chr3: 51469067-51479066 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311378 5265 Fabidae View MSA
124068556 5270 Rosid View MSA
123750744 5271 Pentapetalae View MSA
122797322 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.657       High
cufflinks 1.853        
cufflinks 1.315        
cufflinks 0.62       Low
cufflinks 1.133        
cufflinks 2.157        
cufflinks 2.413       High
cufflinks 1.066        
cufflinks 0.684       Low

0 Strain