Gene : Medtr3g110280 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR11177:SF219 - CHITINASE-LIKE PROTEIN-RELATED Description:  glycoside hydrolase family 18 protein
Genomic Order:  6226 Name:  ? Medtr3g110280
Secondary Identifier:  ? PAC:31060818
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g110280 0.5kb upstream 0.5kb upstream 1647 true chr3: 51467344-51468990 Medicago truncatula
Medtr3g110280 0.5kb upstream 0.5kb upstream 500 false chr3: 51468491-51468990 Medicago truncatula
Medtr3g110280 0.5kb downstream 0.5kb downstream 1647 true chr3: 51466844-51468490 Medicago truncatula
Medtr3g110280 0.5kb downstream 0.5kb downstream 500 false chr3: 51466844-51467343 Medicago truncatula
Medtr3g110280 1.0kb upstream 1.0kb upstream 2147 true chr3: 51467344-51469490 Medicago truncatula
Medtr3g110280 1.0kb upstream 1.0kb upstream 1000 false chr3: 51468491-51469490 Medicago truncatula
Medtr3g110280 1.0kb downstream 1.0kb downstream 2147 true chr3: 51466344-51468490 Medicago truncatula
Medtr3g110280 1.0kb downstream 1.0kb downstream 1000 false chr3: 51466344-51467343 Medicago truncatula
Medtr3g110280 2.0kb upstream 2.0kb upstream 3147 true chr3: 51467344-51470490 Medicago truncatula
Medtr3g110280 2.0kb upstream 2.0kb upstream 2000 false chr3: 51468491-51470490 Medicago truncatula
Medtr3g110280 2.0kb downstream 2.0kb downstream 3147 true chr3: 51465344-51468490 Medicago truncatula
Medtr3g110280 2.0kb downstream 2.0kb downstream 2000 false chr3: 51465344-51467343 Medicago truncatula
Medtr3g110280 5.0kb upstream 5.0kb upstream 6147 true chr3: 51467344-51473490 Medicago truncatula
Medtr3g110280 5.0kb upstream 5.0kb upstream 5000 false chr3: 51468491-51473490 Medicago truncatula
Medtr3g110280 5.0kb downstream 5.0kb downstream 6147 true chr3: 51462344-51468490 Medicago truncatula
Medtr3g110280 5.0kb downstream 5.0kb downstream 5000 false chr3: 51462344-51467343 Medicago truncatula
Medtr3g110280 10.0kb upstream 10.0kb upstream 11147 true chr3: 51467344-51478490 Medicago truncatula
Medtr3g110280 10.0kb upstream 10.0kb upstream 10000 false chr3: 51468491-51478490 Medicago truncatula
Medtr3g110280 10.0kb downstream 10.0kb downstream 11147 true chr3: 51457344-51468490 Medicago truncatula
Medtr3g110280 10.0kb downstream 10.0kb downstream 10000 false chr3: 51457344-51467343 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311378 5265 Fabidae View MSA
124068556 5270 Rosid View MSA
123750744 5271 Pentapetalae View MSA
122797322 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.219        
cufflinks 0.738       High
cufflinks 0.419        
cufflinks 0.06     Low Low
cufflinks 1.113       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.128        
cufflinks 0.326        
cufflinks 0.058     Low Low

0 Strain