Gene : Medtr3g111500 M. truncatula Mt4.0v1
Defline:  (1 of 210) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  6303 Name:  ? Medtr3g111500
Secondary Identifier:  ? PAC:31060821
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g111500 0.5kb upstream 0.5kb upstream 3069 true chr3: 52094882-52097950 Medicago truncatula
Medtr3g111500 0.5kb upstream 0.5kb upstream 500 false chr3: 52097451-52097950 Medicago truncatula
Medtr3g111500 0.5kb downstream 0.5kb downstream 3069 true chr3: 52094382-52097450 Medicago truncatula
Medtr3g111500 0.5kb downstream 0.5kb downstream 500 false chr3: 52094382-52094881 Medicago truncatula
Medtr3g111500 1.0kb upstream 1.0kb upstream 3569 true chr3: 52094882-52098450 Medicago truncatula
Medtr3g111500 1.0kb upstream 1.0kb upstream 1000 false chr3: 52097451-52098450 Medicago truncatula
Medtr3g111500 1.0kb downstream 1.0kb downstream 3569 true chr3: 52093882-52097450 Medicago truncatula
Medtr3g111500 1.0kb downstream 1.0kb downstream 1000 false chr3: 52093882-52094881 Medicago truncatula
Medtr3g111500 2.0kb upstream 2.0kb upstream 4569 true chr3: 52094882-52099450 Medicago truncatula
Medtr3g111500 2.0kb upstream 2.0kb upstream 2000 false chr3: 52097451-52099450 Medicago truncatula
Medtr3g111500 2.0kb downstream 2.0kb downstream 4569 true chr3: 52092882-52097450 Medicago truncatula
Medtr3g111500 2.0kb downstream 2.0kb downstream 2000 false chr3: 52092882-52094881 Medicago truncatula
Medtr3g111500 5.0kb upstream 5.0kb upstream 7569 true chr3: 52094882-52102450 Medicago truncatula
Medtr3g111500 5.0kb upstream 5.0kb upstream 5000 false chr3: 52097451-52102450 Medicago truncatula
Medtr3g111500 5.0kb downstream 5.0kb downstream 7569 true chr3: 52089882-52097450 Medicago truncatula
Medtr3g111500 5.0kb downstream 5.0kb downstream 5000 false chr3: 52089882-52094881 Medicago truncatula
Medtr3g111500 10.0kb upstream 10.0kb upstream 12569 true chr3: 52094882-52107450 Medicago truncatula
Medtr3g111500 10.0kb upstream 10.0kb upstream 10000 false chr3: 52097451-52107450 Medicago truncatula
Medtr3g111500 10.0kb downstream 10.0kb downstream 12569 true chr3: 52084882-52097450 Medicago truncatula
Medtr3g111500 10.0kb downstream 10.0kb downstream 10000 false chr3: 52084882-52094881 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122032232 5273 Angiosperm View MSA
122260953 5265 Fabidae Singleton cluster - no MSA
124070759 5270 Rosid View MSA
123743197 5271 Pentapetalae View MSA
122770561 5272 Eudicot View MSA
121301155 5274 Embryophyte View MSA
123338836 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.601        
cufflinks 0.33        
cufflinks 0.6        
cufflinks 0.129       Low
cufflinks 1.804       High
cufflinks 0.3        
cufflinks 0.451        
cufflinks 0.538        
cufflinks 0.238        

0 Strain