Gene : Medtr3g112050 M. truncatula Mt4.0v1
Defline:  (1 of 2) 2.1.3.3 - Ornithine carbamoyltransferase / OTCase Description:  ornithine carbamoyltransferase
Genomic Order:  6347 Name:  ? Medtr3g112050
Secondary Identifier:  ? PAC:31060106
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4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula ARGSYNBSUB-PWY Medicago truncatula pathologic  
Mtruncatula ARGSYN-PWY Medicago truncatula pathologic  
Mtruncatula CITRULLINE-DEG-PWY Medicago truncatula pathologic  
Mtruncatula PWY-4984 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g112050 0.5kb upstream 0.5kb upstream 4034 true chr3: 52427507-52431540 Medicago truncatula
Medtr3g112050 0.5kb upstream 0.5kb upstream 500 false chr3: 52431041-52431540 Medicago truncatula
Medtr3g112050 0.5kb downstream 0.5kb downstream 4034 true chr3: 52427007-52431040 Medicago truncatula
Medtr3g112050 0.5kb downstream 0.5kb downstream 500 false chr3: 52427007-52427506 Medicago truncatula
Medtr3g112050 1.0kb upstream 1.0kb upstream 4534 true chr3: 52427507-52432040 Medicago truncatula
Medtr3g112050 1.0kb upstream 1.0kb upstream 1000 false chr3: 52431041-52432040 Medicago truncatula
Medtr3g112050 1.0kb downstream 1.0kb downstream 4534 true chr3: 52426507-52431040 Medicago truncatula
Medtr3g112050 1.0kb downstream 1.0kb downstream 1000 false chr3: 52426507-52427506 Medicago truncatula
Medtr3g112050 2.0kb upstream 2.0kb upstream 5534 true chr3: 52427507-52433040 Medicago truncatula
Medtr3g112050 2.0kb upstream 2.0kb upstream 2000 false chr3: 52431041-52433040 Medicago truncatula
Medtr3g112050 2.0kb downstream 2.0kb downstream 5534 true chr3: 52425507-52431040 Medicago truncatula
Medtr3g112050 2.0kb downstream 2.0kb downstream 2000 false chr3: 52425507-52427506 Medicago truncatula
Medtr3g112050 5.0kb upstream 5.0kb upstream 8534 true chr3: 52427507-52436040 Medicago truncatula
Medtr3g112050 5.0kb upstream 5.0kb upstream 5000 false chr3: 52431041-52436040 Medicago truncatula
Medtr3g112050 5.0kb downstream 5.0kb downstream 8534 true chr3: 52422507-52431040 Medicago truncatula
Medtr3g112050 5.0kb downstream 5.0kb downstream 5000 false chr3: 52422507-52427506 Medicago truncatula
Medtr3g112050 10.0kb upstream 10.0kb upstream 13534 true chr3: 52427507-52441040 Medicago truncatula
Medtr3g112050 10.0kb upstream 10.0kb upstream 10000 false chr3: 52431041-52441040 Medicago truncatula
Medtr3g112050 10.0kb downstream 10.0kb downstream 13534 true chr3: 52417507-52431040 Medicago truncatula
Medtr3g112050 10.0kb downstream 10.0kb downstream 10000 false chr3: 52417507-52427506 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306877 5265 Fabidae View MSA
124068629 5270 Rosid View MSA
123736976 5271 Pentapetalae View MSA
122787582 5272 Eudicot View MSA
122042632 5273 Angiosperm View MSA
121351468 5274 Embryophyte View MSA
123427161 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.894     High  
cufflinks 18.372     High  
cufflinks 10.736     High  
cufflinks 12.291     High  
cufflinks 20.252     High  
cufflinks 3.916       Low
cufflinks 15.315     High  
cufflinks 17.737     High  
cufflinks 11.634     High  

0 Strain