Gene : Medtr3g111660 M. truncatula Mt4.0v1
Defline:  (1 of 2) 2.5.1.39 - 4-hydroxybenzoate polyprenyltransferase / 4-hydroxybenzoate nonaprenyltransferase Description:  UbiA family prenyltransferase
Genomic Order:  6317 Name:  ? Medtr3g111660
Secondary Identifier:  ? PAC:31055893
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5871 Medicago truncatula pathologic  
Mtruncatula PWY-5872 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g111660 0.5kb upstream 0.5kb upstream 3545 true chr3: 52208196-52211740 Medicago truncatula
Medtr3g111660 0.5kb upstream 0.5kb upstream 500 false chr3: 52211241-52211740 Medicago truncatula
Medtr3g111660 0.5kb downstream 0.5kb downstream 3545 true chr3: 52207696-52211240 Medicago truncatula
Medtr3g111660 0.5kb downstream 0.5kb downstream 500 false chr3: 52207696-52208195 Medicago truncatula
Medtr3g111660 1.0kb upstream 1.0kb upstream 4045 true chr3: 52208196-52212240 Medicago truncatula
Medtr3g111660 1.0kb upstream 1.0kb upstream 1000 false chr3: 52211241-52212240 Medicago truncatula
Medtr3g111660 1.0kb downstream 1.0kb downstream 4045 true chr3: 52207196-52211240 Medicago truncatula
Medtr3g111660 1.0kb downstream 1.0kb downstream 1000 false chr3: 52207196-52208195 Medicago truncatula
Medtr3g111660 2.0kb upstream 2.0kb upstream 5045 true chr3: 52208196-52213240 Medicago truncatula
Medtr3g111660 2.0kb upstream 2.0kb upstream 2000 false chr3: 52211241-52213240 Medicago truncatula
Medtr3g111660 2.0kb downstream 2.0kb downstream 5045 true chr3: 52206196-52211240 Medicago truncatula
Medtr3g111660 2.0kb downstream 2.0kb downstream 2000 false chr3: 52206196-52208195 Medicago truncatula
Medtr3g111660 5.0kb upstream 5.0kb upstream 8045 true chr3: 52208196-52216240 Medicago truncatula
Medtr3g111660 5.0kb upstream 5.0kb upstream 5000 false chr3: 52211241-52216240 Medicago truncatula
Medtr3g111660 5.0kb downstream 5.0kb downstream 8045 true chr3: 52203196-52211240 Medicago truncatula
Medtr3g111660 5.0kb downstream 5.0kb downstream 5000 false chr3: 52203196-52208195 Medicago truncatula
Medtr3g111660 10.0kb upstream 10.0kb upstream 13045 true chr3: 52208196-52221240 Medicago truncatula
Medtr3g111660 10.0kb upstream 10.0kb upstream 10000 false chr3: 52211241-52221240 Medicago truncatula
Medtr3g111660 10.0kb downstream 10.0kb downstream 13045 true chr3: 52198196-52211240 Medicago truncatula
Medtr3g111660 10.0kb downstream 10.0kb downstream 10000 false chr3: 52198196-52208195 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122316392 5265 Fabidae View MSA
124066892 5270 Rosid View MSA
123737843 5271 Pentapetalae View MSA
122788354 5272 Eudicot View MSA
122042592 5273 Angiosperm View MSA
121344514 5274 Embryophyte View MSA
123428392 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.233        
cufflinks 0.194        
cufflinks 0.203        
cufflinks 0.087       Low
cufflinks 0.361       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.153        
cufflinks 0.138        
cufflinks 0.077     Low Low

0 Strain