Gene : Medtr3g104120 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR12000//PTHR12000:SF13 - HEMOGLOBINASE FAMILY MEMBER Description:  vacuolar processing enzyme
Genomic Order:  5721 Name:  ? Medtr3g104120
Secondary Identifier:  ? PAC:31057749
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g104120 0.5kb upstream 0.5kb upstream 7370 true chr3: 47970999-47978368 Medicago truncatula
Medtr3g104120 0.5kb upstream 0.5kb upstream 500 false chr3: 47977869-47978368 Medicago truncatula
Medtr3g104120 0.5kb downstream 0.5kb downstream 7370 true chr3: 47970499-47977868 Medicago truncatula
Medtr3g104120 0.5kb downstream 0.5kb downstream 500 false chr3: 47970499-47970998 Medicago truncatula
Medtr3g104120 1.0kb upstream 1.0kb upstream 7870 true chr3: 47970999-47978868 Medicago truncatula
Medtr3g104120 1.0kb upstream 1.0kb upstream 1000 false chr3: 47977869-47978868 Medicago truncatula
Medtr3g104120 1.0kb downstream 1.0kb downstream 7870 true chr3: 47969999-47977868 Medicago truncatula
Medtr3g104120 1.0kb downstream 1.0kb downstream 1000 false chr3: 47969999-47970998 Medicago truncatula
Medtr3g104120 2.0kb upstream 2.0kb upstream 8870 true chr3: 47970999-47979868 Medicago truncatula
Medtr3g104120 2.0kb upstream 2.0kb upstream 2000 false chr3: 47977869-47979868 Medicago truncatula
Medtr3g104120 2.0kb downstream 2.0kb downstream 8870 true chr3: 47968999-47977868 Medicago truncatula
Medtr3g104120 2.0kb downstream 2.0kb downstream 2000 false chr3: 47968999-47970998 Medicago truncatula
Medtr3g104120 5.0kb upstream 5.0kb upstream 11870 true chr3: 47970999-47982868 Medicago truncatula
Medtr3g104120 5.0kb upstream 5.0kb upstream 5000 false chr3: 47977869-47982868 Medicago truncatula
Medtr3g104120 5.0kb downstream 5.0kb downstream 11870 true chr3: 47965999-47977868 Medicago truncatula
Medtr3g104120 5.0kb downstream 5.0kb downstream 5000 false chr3: 47965999-47970998 Medicago truncatula
Medtr3g104120 10.0kb upstream 10.0kb upstream 16870 true chr3: 47970999-47987868 Medicago truncatula
Medtr3g104120 10.0kb upstream 10.0kb upstream 10000 false chr3: 47977869-47987868 Medicago truncatula
Medtr3g104120 10.0kb downstream 10.0kb downstream 16870 true chr3: 47960999-47977868 Medicago truncatula
Medtr3g104120 10.0kb downstream 10.0kb downstream 10000 false chr3: 47960999-47970998 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307838 5265 Fabidae View MSA
124069036 5270 Rosid View MSA
123743278 5271 Pentapetalae View MSA
122791730 5272 Eudicot View MSA
122046408 5273 Angiosperm View MSA
121350664 5274 Embryophyte View MSA
123428632 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.899       Low
cufflinks 11.419     High  
cufflinks 13.451     High  
cufflinks 10.697     High  
cufflinks 11.489     High  
cufflinks 9.533        
cufflinks 6.734       Low
cufflinks 13.234     High  
cufflinks 11.598     High  

0 Strain