Gene : Medtr3g105190 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF00122//PF00403//PF00702 - E1-E2 ATPase (E1-E2_ATPase) // Heavy-metal-associated domain (HMA) // haloacid dehalogenase-like hydrolase (Hydrolase) Description:  copper-transporting ATPase PAA1, putative
Genomic Order:  5799 Name:  ? Medtr3g105190
Secondary Identifier:  ? PAC:31056942
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g105190 0.5kb upstream 0.5kb upstream 10481 true chr3: 48478121-48488601 Medicago truncatula
Medtr3g105190 0.5kb upstream 0.5kb upstream 500 false chr3: 48478121-48478620 Medicago truncatula
Medtr3g105190 0.5kb downstream 0.5kb downstream 10481 true chr3: 48478621-48489101 Medicago truncatula
Medtr3g105190 0.5kb downstream 0.5kb downstream 500 false chr3: 48488602-48489101 Medicago truncatula
Medtr3g105190 1.0kb upstream 1.0kb upstream 10981 true chr3: 48477621-48488601 Medicago truncatula
Medtr3g105190 1.0kb upstream 1.0kb upstream 1000 false chr3: 48477621-48478620 Medicago truncatula
Medtr3g105190 1.0kb downstream 1.0kb downstream 10981 true chr3: 48478621-48489601 Medicago truncatula
Medtr3g105190 1.0kb downstream 1.0kb downstream 1000 false chr3: 48488602-48489601 Medicago truncatula
Medtr3g105190 2.0kb upstream 2.0kb upstream 11981 true chr3: 48476621-48488601 Medicago truncatula
Medtr3g105190 2.0kb upstream 2.0kb upstream 2000 false chr3: 48476621-48478620 Medicago truncatula
Medtr3g105190 2.0kb downstream 2.0kb downstream 11981 true chr3: 48478621-48490601 Medicago truncatula
Medtr3g105190 2.0kb downstream 2.0kb downstream 2000 false chr3: 48488602-48490601 Medicago truncatula
Medtr3g105190 5.0kb upstream 5.0kb upstream 14981 true chr3: 48473621-48488601 Medicago truncatula
Medtr3g105190 5.0kb upstream 5.0kb upstream 5000 false chr3: 48473621-48478620 Medicago truncatula
Medtr3g105190 5.0kb downstream 5.0kb downstream 14981 true chr3: 48478621-48493601 Medicago truncatula
Medtr3g105190 5.0kb downstream 5.0kb downstream 5000 false chr3: 48488602-48493601 Medicago truncatula
Medtr3g105190 10.0kb upstream 10.0kb upstream 19981 true chr3: 48468621-48488601 Medicago truncatula
Medtr3g105190 10.0kb upstream 10.0kb upstream 10000 false chr3: 48468621-48478620 Medicago truncatula
Medtr3g105190 10.0kb downstream 10.0kb downstream 19981 true chr3: 48478621-48498601 Medicago truncatula
Medtr3g105190 10.0kb downstream 10.0kb downstream 10000 false chr3: 48488602-48498601 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308435 5265 Fabidae View MSA
124065227 5270 Rosid View MSA
123737112 5271 Pentapetalae View MSA
122796910 5272 Eudicot View MSA
122047959 5273 Angiosperm View MSA
121350289 5274 Embryophyte View MSA
123427971 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.78        
cufflinks 5.251       High
cufflinks 4.33        
cufflinks 0.266        
cufflinks 4.791       High
cufflinks 0.121     Low Low
cufflinks 0.401        
cufflinks 4.558        
cufflinks 0.258        

0 Strain