Gene : Medtr3g106000 M. truncatula Mt4.0v1
Defline:  (1 of 9) 5.4.99.5 - Chorismate mutase / Hydroxyphenylpyruvate synthase Description:  chorismate mutase
Genomic Order:  5862 Name:  ? Medtr3g106000
Secondary Identifier:  ? PAC:31057971
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-3461 Medicago truncatula pathologic  
Mtruncatula PWY-3462 Medicago truncatula pathologic  
Mtruncatula PWY-3481 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g106000 0.5kb upstream 0.5kb upstream 9871 true chr3: 48885441-48895311 Medicago truncatula
Medtr3g106000 0.5kb upstream 0.5kb upstream 500 false chr3: 48894812-48895311 Medicago truncatula
Medtr3g106000 0.5kb downstream 0.5kb downstream 9871 true chr3: 48884941-48894811 Medicago truncatula
Medtr3g106000 0.5kb downstream 0.5kb downstream 500 false chr3: 48884941-48885440 Medicago truncatula
Medtr3g106000 1.0kb upstream 1.0kb upstream 10371 true chr3: 48885441-48895811 Medicago truncatula
Medtr3g106000 1.0kb upstream 1.0kb upstream 1000 false chr3: 48894812-48895811 Medicago truncatula
Medtr3g106000 1.0kb downstream 1.0kb downstream 10371 true chr3: 48884441-48894811 Medicago truncatula
Medtr3g106000 1.0kb downstream 1.0kb downstream 1000 false chr3: 48884441-48885440 Medicago truncatula
Medtr3g106000 2.0kb upstream 2.0kb upstream 11371 true chr3: 48885441-48896811 Medicago truncatula
Medtr3g106000 2.0kb upstream 2.0kb upstream 2000 false chr3: 48894812-48896811 Medicago truncatula
Medtr3g106000 2.0kb downstream 2.0kb downstream 11371 true chr3: 48883441-48894811 Medicago truncatula
Medtr3g106000 2.0kb downstream 2.0kb downstream 2000 false chr3: 48883441-48885440 Medicago truncatula
Medtr3g106000 5.0kb upstream 5.0kb upstream 14371 true chr3: 48885441-48899811 Medicago truncatula
Medtr3g106000 5.0kb upstream 5.0kb upstream 5000 false chr3: 48894812-48899811 Medicago truncatula
Medtr3g106000 5.0kb downstream 5.0kb downstream 14371 true chr3: 48880441-48894811 Medicago truncatula
Medtr3g106000 5.0kb downstream 5.0kb downstream 5000 false chr3: 48880441-48885440 Medicago truncatula
Medtr3g106000 10.0kb upstream 10.0kb upstream 19371 true chr3: 48885441-48904811 Medicago truncatula
Medtr3g106000 10.0kb upstream 10.0kb upstream 10000 false chr3: 48894812-48904811 Medicago truncatula
Medtr3g106000 10.0kb downstream 10.0kb downstream 19371 true chr3: 48875441-48894811 Medicago truncatula
Medtr3g106000 10.0kb downstream 10.0kb downstream 10000 false chr3: 48875441-48885440 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297137 5265 Fabidae View MSA
124041578 5270 Rosid View MSA
123742772 5271 Pentapetalae View MSA
122797161 5272 Eudicot View MSA
122050627 5273 Angiosperm View MSA
121312036 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.011     Low Low
cufflinks 0.389       High
cufflinks 0.156        
cufflinks 0.007     Low Low
cufflinks 0.281        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.04     Low  
cufflinks 0.188        
cufflinks 0.021     Low  

0 Strain