Gene : Medtr3g105925 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG4835 - DNA-binding protein C1D involved in regulation of double-strand break repair Description:  Sas10/Utp3/C1D family protein
Genomic Order:  5853 Name:  ? Medtr3g105925
Secondary Identifier:  ? PAC:31055884
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g105925 0.5kb upstream 0.5kb upstream 4171 true chr3: 48849527-48853697 Medicago truncatula
Medtr3g105925 0.5kb upstream 0.5kb upstream 500 false chr3: 48849527-48850026 Medicago truncatula
Medtr3g105925 0.5kb downstream 0.5kb downstream 4171 true chr3: 48850027-48854197 Medicago truncatula
Medtr3g105925 0.5kb downstream 0.5kb downstream 500 false chr3: 48853698-48854197 Medicago truncatula
Medtr3g105925 1.0kb upstream 1.0kb upstream 4671 true chr3: 48849027-48853697 Medicago truncatula
Medtr3g105925 1.0kb upstream 1.0kb upstream 1000 false chr3: 48849027-48850026 Medicago truncatula
Medtr3g105925 1.0kb downstream 1.0kb downstream 4671 true chr3: 48850027-48854697 Medicago truncatula
Medtr3g105925 1.0kb downstream 1.0kb downstream 1000 false chr3: 48853698-48854697 Medicago truncatula
Medtr3g105925 2.0kb upstream 2.0kb upstream 5671 true chr3: 48848027-48853697 Medicago truncatula
Medtr3g105925 2.0kb upstream 2.0kb upstream 2000 false chr3: 48848027-48850026 Medicago truncatula
Medtr3g105925 2.0kb downstream 2.0kb downstream 5671 true chr3: 48850027-48855697 Medicago truncatula
Medtr3g105925 2.0kb downstream 2.0kb downstream 2000 false chr3: 48853698-48855697 Medicago truncatula
Medtr3g105925 5.0kb upstream 5.0kb upstream 8671 true chr3: 48845027-48853697 Medicago truncatula
Medtr3g105925 5.0kb upstream 5.0kb upstream 5000 false chr3: 48845027-48850026 Medicago truncatula
Medtr3g105925 5.0kb downstream 5.0kb downstream 8671 true chr3: 48850027-48858697 Medicago truncatula
Medtr3g105925 5.0kb downstream 5.0kb downstream 5000 false chr3: 48853698-48858697 Medicago truncatula
Medtr3g105925 10.0kb upstream 10.0kb upstream 13671 true chr3: 48840027-48853697 Medicago truncatula
Medtr3g105925 10.0kb upstream 10.0kb upstream 10000 false chr3: 48840027-48850026 Medicago truncatula
Medtr3g105925 10.0kb downstream 10.0kb downstream 13671 true chr3: 48850027-48863697 Medicago truncatula
Medtr3g105925 10.0kb downstream 10.0kb downstream 10000 false chr3: 48853698-48863697 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301257 5265 Fabidae View MSA
124064707 5270 Rosid View MSA
123740076 5271 Pentapetalae View MSA
122793567 5272 Eudicot View MSA
122042099 5273 Angiosperm View MSA
121346088 5274 Embryophyte View MSA
123425407 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.638       Low
cufflinks 1.374        
cufflinks 1.748        
cufflinks 1.607        
cufflinks 1.875       High
cufflinks 0.701       Low
cufflinks 0.996        
cufflinks 1.554        
cufflinks 1.023        

0 Strain