Gene : Medtr3g106700 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR24007//PTHR24007:SF6 - BRCA1-ASSOCIATED PROTEIN Description:  CGS1 mRNA stability protein
Genomic Order:  5908 Name:  ? Medtr3g106700
Secondary Identifier:  ? PAC:31056171
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g106700 0.5kb upstream 0.5kb upstream 11623 true chr3: 49304426-49316048 Medicago truncatula
Medtr3g106700 0.5kb upstream 0.5kb upstream 500 false chr3: 49315549-49316048 Medicago truncatula
Medtr3g106700 0.5kb downstream 0.5kb downstream 11623 true chr3: 49303926-49315548 Medicago truncatula
Medtr3g106700 0.5kb downstream 0.5kb downstream 500 false chr3: 49303926-49304425 Medicago truncatula
Medtr3g106700 1.0kb upstream 1.0kb upstream 12123 true chr3: 49304426-49316548 Medicago truncatula
Medtr3g106700 1.0kb upstream 1.0kb upstream 1000 false chr3: 49315549-49316548 Medicago truncatula
Medtr3g106700 1.0kb downstream 1.0kb downstream 12123 true chr3: 49303426-49315548 Medicago truncatula
Medtr3g106700 1.0kb downstream 1.0kb downstream 1000 false chr3: 49303426-49304425 Medicago truncatula
Medtr3g106700 2.0kb upstream 2.0kb upstream 13123 true chr3: 49304426-49317548 Medicago truncatula
Medtr3g106700 2.0kb upstream 2.0kb upstream 2000 false chr3: 49315549-49317548 Medicago truncatula
Medtr3g106700 2.0kb downstream 2.0kb downstream 13123 true chr3: 49302426-49315548 Medicago truncatula
Medtr3g106700 2.0kb downstream 2.0kb downstream 2000 false chr3: 49302426-49304425 Medicago truncatula
Medtr3g106700 5.0kb upstream 5.0kb upstream 16123 true chr3: 49304426-49320548 Medicago truncatula
Medtr3g106700 5.0kb upstream 5.0kb upstream 5000 false chr3: 49315549-49320548 Medicago truncatula
Medtr3g106700 5.0kb downstream 5.0kb downstream 16123 true chr3: 49299426-49315548 Medicago truncatula
Medtr3g106700 5.0kb downstream 5.0kb downstream 5000 false chr3: 49299426-49304425 Medicago truncatula
Medtr3g106700 10.0kb upstream 10.0kb upstream 21123 true chr3: 49304426-49325548 Medicago truncatula
Medtr3g106700 10.0kb upstream 10.0kb upstream 10000 false chr3: 49315549-49325548 Medicago truncatula
Medtr3g106700 10.0kb downstream 10.0kb downstream 21123 true chr3: 49294426-49315548 Medicago truncatula
Medtr3g106700 10.0kb downstream 10.0kb downstream 10000 false chr3: 49294426-49304425 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299324 5265 Fabidae View MSA
124061344 5270 Rosid View MSA
123739749 5271 Pentapetalae View MSA
122792414 5272 Eudicot View MSA
122050802 5273 Angiosperm View MSA
121344961 5274 Embryophyte View MSA
123425037 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.397        
cufflinks 3.184        
cufflinks 3.487        
cufflinks 0.574       Low
cufflinks 3.481        
cufflinks 0.881       Low
cufflinks 1.916        
cufflinks 3.166        
cufflinks 1.514        

0 Strain