Gene : Medtr3g106660 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR10774:SF91 - SYNAPTOTAGMIN-5 Description:  calcium-dependent lipid-binding (CaLB domain) family protein
Genomic Order:  5905 Name:  ? Medtr3g106660
Secondary Identifier:  ? PAC:31056929
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g106660 0.5kb upstream 0.5kb upstream 6500 true chr3: 49289363-49295862 Medicago truncatula
Medtr3g106660 0.5kb upstream 0.5kb upstream 500 false chr3: 49295363-49295862 Medicago truncatula
Medtr3g106660 0.5kb downstream 0.5kb downstream 6500 true chr3: 49288863-49295362 Medicago truncatula
Medtr3g106660 0.5kb downstream 0.5kb downstream 500 false chr3: 49288863-49289362 Medicago truncatula
Medtr3g106660 1.0kb upstream 1.0kb upstream 7000 true chr3: 49289363-49296362 Medicago truncatula
Medtr3g106660 1.0kb upstream 1.0kb upstream 1000 false chr3: 49295363-49296362 Medicago truncatula
Medtr3g106660 1.0kb downstream 1.0kb downstream 7000 true chr3: 49288363-49295362 Medicago truncatula
Medtr3g106660 1.0kb downstream 1.0kb downstream 1000 false chr3: 49288363-49289362 Medicago truncatula
Medtr3g106660 2.0kb upstream 2.0kb upstream 8000 true chr3: 49289363-49297362 Medicago truncatula
Medtr3g106660 2.0kb upstream 2.0kb upstream 2000 false chr3: 49295363-49297362 Medicago truncatula
Medtr3g106660 2.0kb downstream 2.0kb downstream 8000 true chr3: 49287363-49295362 Medicago truncatula
Medtr3g106660 2.0kb downstream 2.0kb downstream 2000 false chr3: 49287363-49289362 Medicago truncatula
Medtr3g106660 5.0kb upstream 5.0kb upstream 11000 true chr3: 49289363-49300362 Medicago truncatula
Medtr3g106660 5.0kb upstream 5.0kb upstream 5000 false chr3: 49295363-49300362 Medicago truncatula
Medtr3g106660 5.0kb downstream 5.0kb downstream 11000 true chr3: 49284363-49295362 Medicago truncatula
Medtr3g106660 5.0kb downstream 5.0kb downstream 5000 false chr3: 49284363-49289362 Medicago truncatula
Medtr3g106660 10.0kb upstream 10.0kb upstream 16000 true chr3: 49289363-49305362 Medicago truncatula
Medtr3g106660 10.0kb upstream 10.0kb upstream 10000 false chr3: 49295363-49305362 Medicago truncatula
Medtr3g106660 10.0kb downstream 10.0kb downstream 16000 true chr3: 49279363-49295362 Medicago truncatula
Medtr3g106660 10.0kb downstream 10.0kb downstream 10000 false chr3: 49279363-49289362 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312116 5265 Fabidae View MSA
124064660 5270 Rosid View MSA
123752757 5271 Pentapetalae View MSA
122788574 5272 Eudicot View MSA
122044144 5273 Angiosperm View MSA
123429031 5275 Viridiplantae View MSA
121350044 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.01     Low  
cufflinks 0.024     Low High
cufflinks 0.012     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low Low
cufflinks 0.013     Low  
cufflinks 0.005     Low  

0 Strain