Gene : Medtr3g108060 M. truncatula Mt4.0v1
Defline:  (1 of 210) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  6006 Name:  ? Medtr3g108060
Secondary Identifier:  ? PAC:31059629
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Ontology Annotation Displayer

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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g108060 0.5kb upstream 0.5kb upstream 3236 true chr3: 49927088-49930323 Medicago truncatula
Medtr3g108060 0.5kb upstream 0.5kb upstream 500 false chr3: 49927088-49927587 Medicago truncatula
Medtr3g108060 0.5kb downstream 0.5kb downstream 3236 true chr3: 49927588-49930823 Medicago truncatula
Medtr3g108060 0.5kb downstream 0.5kb downstream 500 false chr3: 49930324-49930823 Medicago truncatula
Medtr3g108060 1.0kb upstream 1.0kb upstream 3736 true chr3: 49926588-49930323 Medicago truncatula
Medtr3g108060 1.0kb upstream 1.0kb upstream 1000 false chr3: 49926588-49927587 Medicago truncatula
Medtr3g108060 1.0kb downstream 1.0kb downstream 3736 true chr3: 49927588-49931323 Medicago truncatula
Medtr3g108060 1.0kb downstream 1.0kb downstream 1000 false chr3: 49930324-49931323 Medicago truncatula
Medtr3g108060 2.0kb upstream 2.0kb upstream 4736 true chr3: 49925588-49930323 Medicago truncatula
Medtr3g108060 2.0kb upstream 2.0kb upstream 2000 false chr3: 49925588-49927587 Medicago truncatula
Medtr3g108060 2.0kb downstream 2.0kb downstream 4736 true chr3: 49927588-49932323 Medicago truncatula
Medtr3g108060 2.0kb downstream 2.0kb downstream 2000 false chr3: 49930324-49932323 Medicago truncatula
Medtr3g108060 5.0kb upstream 5.0kb upstream 7736 true chr3: 49922588-49930323 Medicago truncatula
Medtr3g108060 5.0kb upstream 5.0kb upstream 5000 false chr3: 49922588-49927587 Medicago truncatula
Medtr3g108060 5.0kb downstream 5.0kb downstream 7736 true chr3: 49927588-49935323 Medicago truncatula
Medtr3g108060 5.0kb downstream 5.0kb downstream 5000 false chr3: 49930324-49935323 Medicago truncatula
Medtr3g108060 10.0kb upstream 10.0kb upstream 12736 true chr3: 49917588-49930323 Medicago truncatula
Medtr3g108060 10.0kb upstream 10.0kb upstream 10000 false chr3: 49917588-49927587 Medicago truncatula
Medtr3g108060 10.0kb downstream 10.0kb downstream 12736 true chr3: 49927588-49940323 Medicago truncatula
Medtr3g108060 10.0kb downstream 10.0kb downstream 10000 false chr3: 49930324-49940323 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308362 5265 Fabidae View MSA
124062168 5270 Rosid View MSA
123736487 5271 Pentapetalae View MSA
122788390 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.204        
cufflinks 0.261        
cufflinks 0.31        
cufflinks 0.104        
cufflinks 0.515       High
cufflinks 0.045     Low Low
cufflinks 0.299        
cufflinks 0.245        
cufflinks 0.18        

0 Strain