Gene : Medtr3g108040 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR31407:SF7 - PSBP DOMAIN-CONTAINING PROTEIN 5, CHLOROPLASTIC Description:  PsbP domain protein
Genomic Order:  6005 Name:  ? Medtr3g108040
Secondary Identifier:  ? PAC:31059611
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-101 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g108040 0.5kb upstream 0.5kb upstream 4587 true chr3: 49919901-49924487 Medicago truncatula
Medtr3g108040 0.5kb upstream 0.5kb upstream 500 false chr3: 49919901-49920400 Medicago truncatula
Medtr3g108040 0.5kb downstream 0.5kb downstream 4587 true chr3: 49920401-49924987 Medicago truncatula
Medtr3g108040 0.5kb downstream 0.5kb downstream 500 false chr3: 49924488-49924987 Medicago truncatula
Medtr3g108040 1.0kb upstream 1.0kb upstream 5087 true chr3: 49919401-49924487 Medicago truncatula
Medtr3g108040 1.0kb upstream 1.0kb upstream 1000 false chr3: 49919401-49920400 Medicago truncatula
Medtr3g108040 1.0kb downstream 1.0kb downstream 5087 true chr3: 49920401-49925487 Medicago truncatula
Medtr3g108040 1.0kb downstream 1.0kb downstream 1000 false chr3: 49924488-49925487 Medicago truncatula
Medtr3g108040 2.0kb upstream 2.0kb upstream 6087 true chr3: 49918401-49924487 Medicago truncatula
Medtr3g108040 2.0kb upstream 2.0kb upstream 2000 false chr3: 49918401-49920400 Medicago truncatula
Medtr3g108040 2.0kb downstream 2.0kb downstream 6087 true chr3: 49920401-49926487 Medicago truncatula
Medtr3g108040 2.0kb downstream 2.0kb downstream 2000 false chr3: 49924488-49926487 Medicago truncatula
Medtr3g108040 5.0kb upstream 5.0kb upstream 9087 true chr3: 49915401-49924487 Medicago truncatula
Medtr3g108040 5.0kb upstream 5.0kb upstream 5000 false chr3: 49915401-49920400 Medicago truncatula
Medtr3g108040 5.0kb downstream 5.0kb downstream 9087 true chr3: 49920401-49929487 Medicago truncatula
Medtr3g108040 5.0kb downstream 5.0kb downstream 5000 false chr3: 49924488-49929487 Medicago truncatula
Medtr3g108040 10.0kb upstream 10.0kb upstream 14087 true chr3: 49910401-49924487 Medicago truncatula
Medtr3g108040 10.0kb upstream 10.0kb upstream 10000 false chr3: 49910401-49920400 Medicago truncatula
Medtr3g108040 10.0kb downstream 10.0kb downstream 14087 true chr3: 49920401-49934487 Medicago truncatula
Medtr3g108040 10.0kb downstream 10.0kb downstream 10000 false chr3: 49924488-49934487 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302325 5265 Fabidae View MSA
124062486 5270 Rosid View MSA
123736940 5271 Pentapetalae View MSA
122792817 5272 Eudicot View MSA
122045870 5273 Angiosperm View MSA
121347202 5274 Embryophyte View MSA
123425599 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.332        
cufflinks 5.722        
cufflinks 5.687        
cufflinks 0.591        
cufflinks 8.58       High
cufflinks 0.045     Low Low
cufflinks 0.566        
cufflinks 5.366        
cufflinks 0.529        

0 Strain