Gene : Medtr3g107740 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11624:SF64 - 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN Description:  1-deoxy-D-xylulose-5-phosphate synthase
Genomic Order:  5973 Name:  ? Medtr3g107740
Secondary Identifier:  ? PAC:31058211
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7560 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g107740 0.5kb upstream 0.5kb upstream 6575 true chr3: 49711963-49718537 Medicago truncatula
Medtr3g107740 0.5kb upstream 0.5kb upstream 500 false chr3: 49718038-49718537 Medicago truncatula
Medtr3g107740 0.5kb downstream 0.5kb downstream 6575 true chr3: 49711463-49718037 Medicago truncatula
Medtr3g107740 0.5kb downstream 0.5kb downstream 500 false chr3: 49711463-49711962 Medicago truncatula
Medtr3g107740 1.0kb upstream 1.0kb upstream 7075 true chr3: 49711963-49719037 Medicago truncatula
Medtr3g107740 1.0kb upstream 1.0kb upstream 1000 false chr3: 49718038-49719037 Medicago truncatula
Medtr3g107740 1.0kb downstream 1.0kb downstream 7075 true chr3: 49710963-49718037 Medicago truncatula
Medtr3g107740 1.0kb downstream 1.0kb downstream 1000 false chr3: 49710963-49711962 Medicago truncatula
Medtr3g107740 2.0kb upstream 2.0kb upstream 8075 true chr3: 49711963-49720037 Medicago truncatula
Medtr3g107740 2.0kb upstream 2.0kb upstream 2000 false chr3: 49718038-49720037 Medicago truncatula
Medtr3g107740 2.0kb downstream 2.0kb downstream 8075 true chr3: 49709963-49718037 Medicago truncatula
Medtr3g107740 2.0kb downstream 2.0kb downstream 2000 false chr3: 49709963-49711962 Medicago truncatula
Medtr3g107740 5.0kb upstream 5.0kb upstream 11075 true chr3: 49711963-49723037 Medicago truncatula
Medtr3g107740 5.0kb upstream 5.0kb upstream 5000 false chr3: 49718038-49723037 Medicago truncatula
Medtr3g107740 5.0kb downstream 5.0kb downstream 11075 true chr3: 49706963-49718037 Medicago truncatula
Medtr3g107740 5.0kb downstream 5.0kb downstream 5000 false chr3: 49706963-49711962 Medicago truncatula
Medtr3g107740 10.0kb upstream 10.0kb upstream 16075 true chr3: 49711963-49728037 Medicago truncatula
Medtr3g107740 10.0kb upstream 10.0kb upstream 10000 false chr3: 49718038-49728037 Medicago truncatula
Medtr3g107740 10.0kb downstream 10.0kb downstream 16075 true chr3: 49701963-49718037 Medicago truncatula
Medtr3g107740 10.0kb downstream 10.0kb downstream 10000 false chr3: 49701963-49711962 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308713 5265 Fabidae View MSA
124066019 5270 Rosid View MSA
123737503 5271 Pentapetalae View MSA
122791788 5272 Eudicot View MSA
122044949 5273 Angiosperm View MSA
121310367 5274 Embryophyte View MSA
123347869 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.838        
cufflinks 2.45        
cufflinks 2.614        
cufflinks 1.146        
cufflinks 2.56        
cufflinks 0.692       Low
cufflinks 1.635        
cufflinks 2.102        
cufflinks 1.6        

0 Strain